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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgtacttttctcactgtagattgtagaatctaaagtactgatttatgaagcatatagctagacttatatgaaataaagaatcaccatggaacacccaattttacag

Basic information

species Arabidopsis thaliana
transcript AT1G50240.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 3
ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgta-----cttttctcactgtagattgtagaatctaaa-------gtactgatttatg-aagcatatagctag---acttatatgaaataaagaatcaccatggaacacccaattttacag-------------------------------------------------------------------
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ATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAgtaattagctcttctctctctctctctctctctcttctctgttttgtacttacacatgcaaattcattccatgcgcatctatgcagcagaaagaatgtttcagagatgcaccctaacacaaaatatgcttggttattttgaccatagtttagatgcatgagtagttaatgaaaattttccatatgcag

upper sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgtacttttctcactgtagattgtagaatctaaagtactgatttatgaagcatatagctagacttatatgaaataaagaat-caccatggaacacccaattttacag-
||||||||| | | |||||||||||||||||||||||||| || ||||||||| | | | ||||||||||| || ||||||||||| || ||| | || ||| | || | | | | || || | | | | | ||| | | | ||| || |||| || ||
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgta--tgtccttctgcaa---gtgcatctcattgcatctcttcatcg-gagtgcaattt-atttacaaaagtcttacaattcattgcggaaggaaggccttcctagt

upper sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S72_260V6.1 (Physcomitrella patens), 5'ss of exon 3
ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgta----cttttctcactgtagattgtagaatctaaagtactgatttatgaagcatatagctagacttatatgaaataaagaatcaccatggaacacccaattttacag
| || ||||||||||||||||| ||||||||||| | ||||||| | | ||||| ||||| || || ||| |||| || || ||| || |||| || | || ||| || | || | || | | | | ||| | | ||| | ||| |
---------CAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATTgctcagctatgctcttctcctactgcttgtt-ttgatcataatatattccctttacgataatcttg--aaatttaattccgaagaaggccccggctggccctt------------