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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTTTATGATACAGCCAAAGATCAGCGTGTTACATTTATTGAAAAACCGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAGgttcgtataaataactcattttgtcagattacttctttgattgtgaattcatatgtaacagcgttgatttgaagggttattttttattgtttccag

Basic information

species Arabidopsis thaliana
transcript AT1G08190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G19660.2 (Glycine max), 5'ss of exon 3
TAAAGTTTATGATACAGCCAAAGATCAGCGTGTTACATTTATTGAAAAACCGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAGgttcgtataa--ataactcattttgtcagattacttctttgattgtga-attcatatgtaacagcgttgatttgaagggttattttttattgtttccag---------------------------------------------------------------------------------------
 || ||||||||||| ||||| || |||||| ||||||||||||||||||| ||||| |||||  | ||||||  ||| || || ||| |||||||||||||| ||  ||    ||  ||      | ||| |||| |   |||     || ||      || ||  | ||| ||||| || || | ||   ||   |                                                                                        
GAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGAGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGgttagtcaaatatcaatgcaggcatgctgatgacttatgccattccatcatgcagtgaccactgctataatt-gaaggcttgttctatagctttagaatttgaacagtggcaagagcattatttcatttattgttgtatatctcttgattaaactgtggagcttaatctccttccatcacttgtag

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 3
TAAAGTTTATGATACAGCCAAAGATCAGCGTGTTACATTTATTGAAAAACCGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAGgttcgtataa--ataactcattttgtcagattacttctttgattgtgaattcatatgtaacagcgttg-atttgaagggttattttttattgtttccag--------------------------------------------------------------------------------------
 || ||||||||||| ||||| || |||||| ||||||||||||||||||| || || |||||  | ||||||  ||| || || ||| |||||||||||||| ||  ||    ||  ||      | | | |||| |   ||| |    |    |||  ||  | || | ||||||| || || | ||   ||   |                                                                                       
GAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGGGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGgttagtcaaatatcaatgcaggcatgctgttgacttatgccattctatcatgcagtgtc-cactgctgtaattgaaggcttgttctatagctttagaactttaacagtggcaagagcattatttcatttattctgtatatctcttgattaaactgtggagcttaatctctttccatcacttgtag

upper sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 3
TAAAGTTTATGATACAGCCAAAGATCAGCGTGTTACATTTATTGAAAAACCGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAGgttcgtataaataactcattttgtcagattacttctttgat-tgtgaattcatatgtaacagcgttgatttgaagggttattttttattgtttc-cag----
 |||||||||||||| || || ||||||||| | |||||||||||||  ||||||||||||||  | ||||||  |||  | || ||||| || ||||||||| ||   ||  |   || | | ||   || ||    |     |  |  ||   ||      |   | ||  ||| ||   |  || | |    |||    
AAAAGTTTATGATACTGCTAATGATCAGCGTATAACATTTATTGAAAGGCCGCGAGGAAGCCCACGTCCTGAGATTTTGGTCCCTCACTTAGTGTGGCAGgttagtt--aaggatcaatatagacacggtatttggcagggacatccacccaatggttctcatgcaaactttcaggcttgcatcatagtctagaacagatgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414673|gb|EG457265.1|EG457265
EST:     CGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAG                         GATGACACTCTCCTTGTGATTGGTTGGGGAACATCAGTTAAAATTGCGTCG
genomic: CGCGAGGAAGCCCCAGGCCTGAGGCTTTACTACCCCACTTGGTTTGGCAGgttcgtataa ... ttgtttccagGATGACACTCTCCTTGTGATTGGTTGGGGAACATCAGTTAAAATTGCGTCG