1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTAAGCAAATTACAAACACCATATCAGAGTCTAAGCCTGTGGAGATTATTGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattctgaaatctttgtttatgcataatgatgcttcaatgcagttttgagacctttagtttattttgttgttgttgttgtcag
species | Arabidopsis thaliana |
transcript | AT5G62240.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430576|gb|EG473168.1|EG473168
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430569|gb|EG473161.1|EG473161
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430567|gb|EG473159.1|EG473159
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430565|gb|EG473157.1|EG473157
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430571|gb|EG473163.1|EG473163
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430578|gb|EG473170.1|EG473170
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430582|gb|EG473174.1|EG473174
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430585|gb|EG473177.1|EG473177
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGGATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGAEST: gi|116430580|gb|EG473172.1|EG473172
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
EST: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACG GCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
genomic: TGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattc ... ttgttgtcagGCTTCATATATTATAACCAAACCGTTAAAGATGTATCCAAGAAAAAATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAAGCAAATTACAAACACCATATCAGAGTCTAAGCCTGTGGAGATTATTGAATCCTCGGAAGCCGAGACCGGTTTGAATTGCAAAGATAAATTCAACGgtaatgattctgaaatctttgtttatgcataatgatgcttcaatgcagttttgagacctttagtttattttgttgttgttgttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG