1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaatttgaaatctttcagggatttaagtttgattttgtgttgatcttgattctgatgtatgttgtggtttttgttatacag
species | Arabidopsis thaliana |
transcript | AT5G45775.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAEST: gi|86063997|gb|DR359754.1|DR359754
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTA
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|86077797|gb|DR373554.1|DR373554
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|124864628|gb|EH949065.1|EH949065
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGAACAAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGEST: gi|124885528|gb|EH964430.1|EH964430
genomic: GTGTTGGAGCAGCTCAGTGGA-CAAA-CCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTG
EST: TGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|47828470|gb|CK118154.1|CK118154
genomic: TGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|47828450|gb|CK118134.1|CK118134
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|86063987|gb|DR359744.1|DR359744
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|125298726|gb|EL312811.1|EL312811
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: TTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|164111227|gb|ES195380.1|ES195380
genomic: TTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGEST: gi|86084150|gb|DR379909.1|DR379909
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATG
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTTTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|86063981|gb|DR359738.1|DR359738
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|116451722|gb|EG494314.1|EG494314
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGTEST: gi|86064031|gb|DR359788.1|DR359788
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
EST: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGG CGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
genomic: GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaat ... tgttatacagCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAGAAGATTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGGAGCAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGgtatgtgaatttgaaatctttcagggatttaagtttgattttgtgttgatcttgattctgatgtatgttgtggtttttgttatacag
- TTGGAG
- - GGAGCA
- - - GAGCAG
- - - - GCAGCT
- - - - CAGCTC
- - - - - AGCTCA
- - - - - - - AGTGGA