1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAGgtaaattaatccttttctatggctctttttctctgtgatgcttgttgcttctctcctctggtttcagatcatcgttgtttttgtggtacag
species | Arabidopsis thaliana |
transcript | AT5G26360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAAGGTTCATCATGGTAATATCCAAGCTTCCAAG GCTGTTGCTGATATCATTCGTACAACATTGGGTCCTACGTTCTATGTTGAAEST: gi|47829135|gb|CK118819.1|CK118819
genomic: TAAGGTTCATCATGGTAATATCCAAGCTTCCAAGgtaaattaat ... tgtggtacagGCTGTTGCTGATATCATTCGTACAACATTGGGTCCT-CGTTCTATGTTGAA
EST: AGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAG GCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAGEST: gi|86074170|gb|DR369927.1|DR369927
genomic: AGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAGgtaaattaat ... tgtggtacagGCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAG
EST: AGCGTGAATCTGGAAGCAAGGTTCATCATGGTAATATCCAAGCTTCCAAG GCTGTTG-TGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAGEST: gi|47830309|gb|CK119993.1|CK119993
genomic: AGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAGgtaaattaat ... tgtggtacagGCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAG
EST: AGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAG GCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAGEST: gi|124914607|gb|EH988481.1|EH988481
genomic: AGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAGgtaaattaat ... tgtggtacagGCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAG
EST: TATCCAAGCTTCCAAG GCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAG
genomic: TATCCAAGCTTCCAAGgtaaattaat ... tgtggtacagGCTGTTGCTGATATCATTCGTACAACATTGGGTCCTCGTTCTATGTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATTCGTTGAAGCGTGAATCTGGAAGTAAGGTTCATCATGGTAATATCCAAGCTTCCAAGgtaaattaatccttttctatggctctttttctctgtgatgcttgttgcttctctcctctggtttcagatcatcgttgtttttgtggtacag
- - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT