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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTTTCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaagtctattgtttttggtcacatttgttacgccttctcttgatatcgtcaatcttatggcaattagatatgattttacaagggaaagaacatatgtttgaaatgattggtattctttgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G21070.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G078895_T02 (Zea mays), 5'ss of exon 2
TTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTTTCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaagtctattgtttttggtcacatttgttacgccttctcttgatatcgtcaatcttatggcaattagatatgattttacaagggaaagaacatatgtttgaaatgattggtattctttgggcag
| ||||||||||| ||||||||||||||||| || ||||| || |||||||| || ||    || |||||| |||| || ||||| || || ||||||||||     | |  || ||    |        ||| |||     | | ||| ||    ||||   |     ||||   | |   || |        |    | ||||                          
TACCTGCATTATCACCTTGTGCAACAACTCTTCCAGTTTTTCTTGCTGTTGGCAACTCTTCCTCAATGATGATTCTTGCAATCATTGTGCTCCTCTTCAGgtc---ttcaccctctttcactccactgttttt-ttattgtatttgttggtactaccaattcaaattgcattat-cacgtcctttctgttattggg---tttgttaac-----------------------

upper sequence: AT5G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G04600.1 (Glycine max), 5'ss of exon 2
TTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTTTCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaagtctattgtttttggtcacatttgttacgccttctcttgatatcgtcaatcttatggcaattagatatgattttacaagggaaagaacatatgtttgaaatgattggtattctttgggcag
|||||||||| ||||||||||| ||||| |||||||| || || |||||||||||||||   ||||||||||| || ||||||||||| || || |||||||   | | | |    | |  ||  | | | | | || |   | | ||| ||            ||   || |   || |   | |    |   || | ||                              
TTCCTGCATTGTCTCCTTGTGCTACAACACTCCCGGTCTTTCTTGCTGTTGGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAGgtattaatcaatggcctatgattatttaaagt-gatatgttatttgttggtaaaacggtgtcagtgattatcaataataaaaattctgatgtt-gaccttaa-----------------------------

upper sequence: AT5G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G44180.1 (Glycine max), 5'ss of exon 2
TTCCTGCATTATCTCCTTGTGCAACAACTCTCCCGGTTTTCCTCGCTGTTGGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaagtctattgtttttggtcacatttgttacgccttctcttgatatcgtcaatcttatggcaattagatatgattttacaagggaaagaacatatgtttgaaatgattggtattctttgggcag
| |||||||| ||||||||||| ||||| ||||| || || || |||||||||||||||   ||||||||||| || ||||||||||| || || |||||||     |   || |||   ||  |  | ||   ||     | ||| || |||  |     || |   |  |  |||   || | |       |      |||||||                        
TCCCTGCATTGTCTCCTTGTGCTACAACACTCCCAGTATTTCTTGCTGTTGGAAATTCCTCTTCCATGATGGTGCTTGCCATCATAGTACTACTATTCAGgta----tttatcaatttccttaagcaatatgattt---tttcctcctgctattttgttctttttcaaacgtgcatacttttcttctgcttccatg-tgcatgtttgg-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124836142|gb|EH920581.1|EH920581
EST:     TGGTTCTCGCCATCATAGTTCTGCTCTTCAG                         CACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAG
genomic: TGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaa ... ctttgggcagCACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAG
EST: gi|164137613|gb|EL982220.1|EL982220
EST:     GAAATTCCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAG                         CACCATATTGGTTATGACATCGCTGGTTGCTCTATC
genomic: GAAATT-CCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaa ... ctttgggcagCACCATATTGGTTATGACATCGCTGGTTGCTCTATC
EST: gi|86074831|gb|DR370588.1|DR370588
EST:     GGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAG                         CACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAG
genomic: GGAAATTCCAAGTCCATGATGGTTCTCGCCATCATAGTTCTGCTCTTCAGgtgagactaa ... ctttgggcagCACCATATTGGTTATGACATCGCTGGTTGCTCTATCGTTCTATGGTGCAAG