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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTAATCTCGAAGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttctccttcttttgtctctttggttttaccactataaaccctatccattatgttccctgtgtgtgtggtatgtttgtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttag

Basic information

species Arabidopsis thaliana
transcript AT5G19180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G01940.2 (Glycine max), 5'ss of exon 2
AGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTAATCTCGAAGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttctccttcttttgtctctttggttttaccactataaaccctatccattatgttccctgtgtgtgtggtatgtttgtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttag
|| |  | ||||||||||| || |||||||| || || || || || ||||||||||| || || ||||||||||||||||| ||||| ||| ||||||||||   |||   | | ||| | | ||  ||||   ||||      |   |   ||    |   |||   | || | || ||||                                                     
AGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAAACCTTGAGGTCATTGATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGgttaacttca--tacatttctttattgcgtttctacact-----tctcttttgttgctgttgttgttgatttgctttgcttgtag---------------------------------------------------

upper sequence: AT5G19180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 2
AGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTAATCTCGAAGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttctccttcttttgtctctttggttttaccactataaaccctatccattatgttccctgtgtgtgtggtatgtttgtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttag
| ||  | ||||| || ||| | || |||||    || |||||||| || |||||||||||||| |||||| ||||||| ||||| |||||||| ||||||||||| | |  ||||||| ||| |||   |||   |  || |   ||    |||  |||           |  | || ||  ||| |  ||       || ||   ||||                         
AACTGTTAAAGGACTTGGCTTTGTCGGGTTTCAAGAACCTCGAAGTCATAGATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttctttt-ttcttttttctttttaaatttctta--atgatttctggttattgggttt----------taatttgattccgaattcattgctgggtttagttctaattcg-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073136|gb|DR368893.1|DR368893
EST:     GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG                         GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGGTAA
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTG-TAA
EST: gi|86072231|gb|DR367988.1|DR367988
EST:     GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG                         GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTTGTAA
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGT-GTAA
EST: gi|86072232|gb|DR367989.1|DR367989
EST:     GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG                         GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGGTAA
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTG-TAA
EST: gi|86072230|gb|DR367987.1|DR367987
EST:     GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG                         GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAAT
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAAT