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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAAgtaagttttcatgacttggaactaaatttaagctagattcttgtcttgttatttatagtattggcaattttttggtgttaattag

Basic information

species Arabidopsis thaliana
transcript AT5G03630.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828725|gb|CK118409.1|CK118409
EST:     TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA                         GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
genomic: TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
EST: gi|124859665|gb|EH944102.1|EH944102
EST:     TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA                         GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
genomic: TCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
EST: gi|124886509|gb|EH965411.1|EH965411
EST:     TGAACTTGCTATCATTTCCAGGGAACAA                         GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
genomic: TGAACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
EST: gi|124969885|gb|EL043753.1|EL043753
EST:     AACTTGCTATCATTTCCAGGGAACAA                         GTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA
genomic: AACTTGCTATCATTTCCAGGGAACAAgtaagttttc ... tgttaattagGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCACCTCGAA