Sequence
atgc intronic sequence ATGC exonic sequenceCAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGCAgtatgtatatttttttctcagacatcttcttcattgatggtatttggattagtgtacttattattgtcttgattatgttgtcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G01220.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G01220.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G09360.1 (Glycine max), 5'ss of exon 2
CAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGCAgtatgtatattttttt---ctcagacatcttcttcattgatggtatttggattagtgtacttattattgtcttgatta-tgttgtcag------------
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TAGTGTGATGTACAATGATGTTGATATGGTTTGGTTGGCAGATCCATTTCCTTATCTGCAAGGGAACCATGATGTGTACTTTACAGATGATATGACTGCAgtaagtgatctcttataagttcatttccttctgtcctttatgtcaattattatattctaataacacggagctacatcaatgctggaaacttgttgtttag
upper sequence: AT4G01220.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv15s0046g01630.t01 (Vitis vinifera), 5'ss of exon 2
CAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGCAgtatgtatatttttttctcagacatcttcttcattgatggtatttggatt----agtgtacttattattgtcttgattatgttgtcag------------
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TAATGTTATGTACAATGATGTTGATATGGTGTGGTTGGCGGATCCATTTCCCTATTTGCAAGGGAAGCATGATGTCTACTTCACTGATGATATGGCTGCAgtatgtataccgactttgcttttagctttcagtgtgttccggtgtgaactgtaaattattcatgtcatggtatgagtaatggaattgatagtacaatagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86088022|gb|DR383781.1|DR383781EST: ATGGATGATATGACTGCA ATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAAGGA
genomic: ATGGATGATATGACTGCAgtatgtatat ... atgttgtcagATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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CAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCAAGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGCAgtatgtatatttttttctcagacatcttcttcattgatggtatttggattagtgtacttattattgtcttgattatgttgtcag
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