1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGCTGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGgttttttcttcacaagtttttgcttttatccttttaaatctttcctctatgaatggtttggttctaaatggcatctcttggtttgaaatttttgttgaaatgcag
species | Arabidopsis thaliana |
transcript | AT3G55000.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGCTTCATGCTTCTCCTTCAG GAAGGTTACTATCTGCGTTGATTTGTGAEST: gi|19877291|gb|AU238122.1|AU238122
genomic: AGGAAGCTTCATGCTTCTCCTTCAGgttttttctt ... tgaaatgcagGAAGGTTACTATCTGCGTTGATTTGTGA
EST: GTTGGGAAGCTGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAG GAAGGTTACTATCTGCGTTGATTTGTGAATACTTGGACTGGGCACAACTTA
genomic: GTTGGGAAGCTGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGgttttttctt ... tgaaatgcagGAAGGTTACTATCTGCGTTGATTTGTGAATACTTGGACTGGGCACAACTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGCTGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGgttttttcttcacaagtttttgcttttatccttttaaatctttcctctatgaatggtttggttctaaatggcatctcttggtttgaaatttttgttgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA