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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTTGAATCTTCTCTGGGCGTTTGAACTCAGAGCTACTGCATCATGGGTTTTCCAATTGGGAATCAAAAGGGGTATCTTCAGTCTCGATGTTTTTAGgtcagtcttgtatacgttcataaatggtgttaacactcgcccatgaactagtcacttgtttctcatgcaaatgtttccaaatgcacagagtgtttagcagtaacatttgtgattcactttgatttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G18110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G01570.1 (Glycine max), 5'ss of exon 2
CTCTTTTGAATCTTCTCTGGGCGTTTGAACTCAGAGCTACTGCATCATGGGTTTTCCAATTGGGAATCAAAAGGGGTATCTTCAGTCTCGATGTTTTTAGgtcagtcttgta--tacgtt--cataaatggtg-ttaacactcgcccatgaacta-gtcacttgtttctcatgcaaatgtttccaaatgcacagagtgtttagcagtaacattt-gtgattcactttgatttttcag----------------------
|| |  || ||||  | ||||| ||||||||| | |||||||||||||||||||||||||| | |||||||||  | || |   | |  ||| |||||||||  || || |   ||| ||  ||||| |  |   ||  |   ||   || |  | ||       | |  |  || | |  |     |   || | | || |   |||   ||| ||   |||  | | ||  | |                       
CTTTGGTGGATCTCTTGTGGGCATTTGAACTCCGGGCTACTGCATCATGGGTTTTCCAATTAGCAATCAAAAGAAGCATTTATCGCCATGATATTTTTAGgtaggttttatgggtaccttagcataattcttaactatgatatgcttttggaggaagttgtaaactgccgaaacaca-gcatatgtcttgtcataattttcaaatgtagtgtttagtagctcaactaggttgcttattgcttgtatcaatcaattgcag

upper sequence: AT3G18110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0039g02570.t01 (Vitis vinifera), 5'ss of exon 2
CTCTTTTGAATCTTCTCTGGGCGTTTGAACTCAGAGCTACTGCATCATGGGTTTTCCAATTGGGAATCAAAAGGGGTATCTTCAGTCTCGATGTTTTTAGgtcagtcttgtatacgttcataaatggtgttaacactcgcccatgaactagtcacttgtttctcatgcaaatgtttccaaatgcacagagtgtttagcagtaacatttgtgattcactttgatttttcag
||||     | ||  | ||||| ||||||||| | |||||||| ||||||||||||||||||| | | || ||| ||||||   | |  ||||| || ||||   |  |   | | ||  |  |   | |  |  ||    | |    ||   |   | ||   ||       ||| |  | | | ||  ||  ||||  |                             
CTCTCGAAGACCTATTGTGGGCATTTGAACTCCGGGCTACTGCTTCATGGGTTTTCCAATTGGCAGTTAAGAGGAGTATCTATCGCCATGATGTGTTCAGgtatctagttagttcttttctttactatctctatgcttattctttgtttatcaa---ggttagaatttttgctttttctga-gaagagcatgactagccttgga--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125284618|gb|EL298703.1|EL298703
EST:     GTTTTCCAATTGGGAATCAAAAGGGGTATCTTCAGTCTCGATGTTTTTAG                         GGTGGCGGACAAGGACTGGGGTGCGGATTTCAGAAGGCTGTCTGGAGGTGC
genomic: GTTTTCCAATTGGGAATCAAAAGGGGTATCTTCAGTCTCGATGTTTTTAGgtcagtcttg ... gatttttcagGGTGGCGGACAAGGACTGGGGTGCGGATTTCAGAAGGCTGTCTGGAGGTGC