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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTATTTTGATAGATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttctctagctattttcaagtgttgaggctctttaactcaattaacttcttacaaaacttttttggattag

Basic information

species Arabidopsis thaliana
transcript AT3G15840.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15840.4 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv09s0002g06980.t01 (Vitis vinifera), 5'ss of exon 3
TGATTATTTTGATAGATACAAGCTTCCTTCATGGGCCATGTTCGAGATGGGTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttctctag----ctattttcaagtgttgag--gctctttaactcaattaacttcttacaaaacttttttggattag------------
              | |  ||||||||||||||||| ||||| ||  | || |  |||||||| |||||||| ||||||||||| ||||| || |  || ||| |||| ||| |     |  ||| | |   |  |  ||  |||  ||   ||   || || |   | |  | ||  | |             
--------------GGT-TAAGCTTCCTTCATGGGCGATGTTTGAACTTGGGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgtcttggttgttgattttaggaactcggttgcattttcccttggttttattattccgttaatgatgtgcttgaaaaatttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125140334|gb|EL178636.1|EL178636
EST:     ACTGCTCCTGTGTACTGGAAAACCATGTTAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTT
genomic: ACTGCTCCTGTGTACTGGAAAACCATG--AATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTT
EST: gi|116420760|gb|EG463352.1|EG463352
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTT
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTT
EST: gi|125127295|gb|EL172214.1|EL172214
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTT
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTT
EST: gi|124825140|gb|EH910006.1|EH910006
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAA
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAA
EST: gi|125321733|gb|EL335818.1|EL335818
EST:     CTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAACAAACTCACTACT
genomic: CTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACT-CT
EST: gi|124808956|gb|EH894810.1|EH894810
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATACCAGCTGCAAGCAAACTCACTCT
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAAT-CCAGCTGCAAGCAAACTCACTCT
EST: gi|125118175|gb|EL167002.1|EL167002
EST:     CTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCAACTCT
genomic: CTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCA-CTCT
EST: gi|125298219|gb|EL312304.1|EL312304
EST:     GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTT
genomic: GTACTGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTT
EST: gi|116428971|gb|EG471563.1|EG471563
EST:     TGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCA                         GGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTT
genomic: TGCTCCTGTGTACTGGAAAACCATGAATGGTCTTCCACCAACCTCAgtaagtttct ... tttggattagGGTGAAAAGTTGAAACTTTTCTATAATCCAGCTGCAAGCAAACTCACTCTT