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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAGCTTATGTCAAATTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGGATACACAATCACTATgtaggtagtttctattcaagtggctttgtttcagtagaccattaattgttttcactagtgtgtgtgtttgaaaggctgtaattatgagtgatactgggtcattctcatttttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G10540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070402|gb|DR366159.1|DR366159
EST:     TCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGGATACACAATCACTAT                         ACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCA
genomic: TCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGGATACACAATCACTATgtaggtagtt ... atttttgtagACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCA
EST: gi|86070404|gb|DR366161.1|DR366161
EST:     TCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGGATACACAATCACTAT                         ACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCA
genomic: TCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGGATACACAATCACTATgtaggtagtt ... atttttgtagACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAATCACCA