1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
AGAGTGAAAGTCTATCATTTGAATGAAGATGGTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtgattctaattgacttcctgaattccatctgctgcgggtattctgcagcacttattatgtaaaacatatttccagaatttgtagctaaatggaaatactatatgatgcag
species | Arabidopsis thaliana |
transcript | AT3G06670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTAAATGGGGTGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116427932|gb|EG470524.1|EG470524
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116447731|gb|EG490323.1|EG490323
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116423237|gb|EG465829.1|EG465829
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116424515|gb|EG467107.1|EG467107
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116417449|gb|EG460041.1|EG460041
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAACCATCGACTTTGTGGAA CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116412443|gb|EG455035.1|EG455035
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116411545|gb|EG454137.1|EG454137
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116407356|gb|EG449948.1|EG449948
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116449069|gb|EG491661.1|EG491661
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116442487|gb|EG485079.1|EG485079
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116413313|gb|EG455905.1|EG455905
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116444990|gb|EG487582.1|EG487582
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116449085|gb|EG491677.1|EG491677
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116449109|gb|EG491701.1|EG491701
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116428347|gb|EG470939.1|EG470939
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116432099|gb|EG474691.1|EG474691
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116407371|gb|EG449963.1|EG449963
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116417526|gb|EG460118.1|EG460118
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116448708|gb|EG491300.1|EG491300
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116411537|gb|EG454129.1|EG454129
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116426306|gb|EG468898.1|EG468898
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116449103|gb|EG491695.1|EG491695
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|124856931|gb|EH941368.1|EH941368
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116460005|gb|EG502597.1|EG502597
genomic: GACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116434816|gb|EG477408.1|EG477408
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGCGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACGEST: gi|116379504|gb|EG422096.1|EG422096
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
EST: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAG CGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
genomic: GTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtg ... tatgatgcagCGATCTGAAGAACTCAGTCTATGTGTAATTGATGAAGAAGATAACGAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTGAAAGTCTATCATTTGAATGAAGATGGTAAATGGGATGATCGAGGAACTGGGCACGTAAGCATCGACTTTGTGGAGgtctgttgtgattctaattgacttcctgaattccatctgctgcgggtattctgcagcacttattatgtaaaacatatttccagaatttgtagctaaatggaaatactatatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG