1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTGAAACCGAACACAAAGCAGAAACTAAAAAGAGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctgctcgtctttttcttcttctttcccttgattttgctgattgttgttttagtttacgggatggtatcatagttgttcataggtaggattttagatgttttcttctctgttgttaaaatagatttcttatatctttctaacatttggcag
species | Arabidopsis thaliana |
transcript | AT3G04500.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCGGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCTGAAA ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGEST: gi|19878344|gb|AU239175.1|AU239175
genomic: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctg ... catttggcagATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATG
EST: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAA ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGEST: gi|86088425|gb|DR384184.1|DR384184
genomic: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctg ... catttggcagATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATG
EST: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAA ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATGEST: gi|47828762|gb|CK118446.1|CK118446
genomic: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctg ... catttggcagATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATG
EST: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAA ATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATG
genomic: AGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctg ... catttggcagATGACTATCGTCTGTTCTGTGGTGATCTTGGGAACGAAGTGAATGATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAAACCGAACACAAAGCAGAAACTAAAAAGAGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctgctcgtctttttcttcttctttcccttgattttgctgattgttgttttagtttacgggatggtatcatagttgttcataggtaggattttagatgttttcttctctgttgttaaaatagatttcttatatctttctaacatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT