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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGATGAGGATGAACATCAATTGGCAGCTGATGTTCATCGCCTTTATTCTCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttcagttgcatttatgcttggtgtctgatatatgcatttagtcttttagtttcctgtttgatactttcatgaatttcttttagattcgtatgct...

Basic information

species Arabidopsis thaliana
transcript AT2G39810.1
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G03840.1 (Glycine max), 5'ss of exon 2
TCGGATGAGGATGAACATCAATTGGCAGCTGATGTTCATCGCCTTTATTCTCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttcagttgcatttatgcttggtgtctgatatatgcatttagtcttttagtttcctgtttgatacttt---catgaatttcttttagattcgtatgct-
   || || |  ||  |  |  |  | |||||||| || |||||||||||||||||||||||| |  |  | ||||| ||| | ||  |  ||||||| |||||||||    | |||   | |||  |   ||  ||||    ||    | ||| ||| ||  || | | |||    || |||  || | | ||| ||| |   
AGAGAAGATGGGGAGAAAGACCTAACTGCTGATGTACAGCGCCTTTATTCTCTGTTTGATGTTACACTTGAGAATAACTTGGTTTCTTTAATTTGCCACTgtatcctttt-ctacatcagtcctt--ttattggcatattttattttattattaatttacttattaaaattttaaatataaatacctgtca-attggtaagtaa

upper sequence: AT2G39810.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv00s0299g00030.t01 (Vitis vinifera), 5'ss of exon 1
TCGGATGAGGATGAACATCAATTGGCAGCTGATGTTCATCGCCTTTATTCTCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttcagttgcatttatgcttggtgtctgatatatgcattta---gtcttttagtttcctgtttg-atactttcatgaatttcttttagattcgtatgct
   |||||    ||  | |||  | | |||||||| || |||||||||||| ||||||||||||| ||| | || || ||| | ||  || ||||||||||||||| |  ||||    | |  ||| | |    || |||  ||      |  |||| |||  | ||   | |||  | ||||| ||  |  | ||   | |  
AAAGATGATAGCGAGAAGCAACAGACTGCTGATGTACAACGCCTTTATTCTTTGTTTGATGTTGCCATGGAGAACAACTTGGTTTCTTTGATTTGCCATTgtatccctttgttgttcctttagttg-tcttcattagatgttttggcatatgatttatttttattttcacaaactaacgtgaatatcact--gtttttaacga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875888|gb|AU236719.1|AU236719
EST:     TCTGNTTGATGNTGCTATGAACAATAATTTGATCTCGGTGGGTTGCCATT                         ATATCACCAATGTCTGNATGGATGAGACAGCTG-ATCTAGTGATCC
genomic: TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttca ... aaattaatagATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCC
EST: gi|116394345|gb|EG436937.1|EG436937
EST:     TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATT                         ATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA
genomic: TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttca ... aaattaatagATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA
EST: gi|116394328|gb|EG436920.1|EG436920
EST:     TCTGGTTGATGGTGCTATGAACAATAATTTGATCTCGGTGGTTTGGCATT                         ATATCACCCATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCCGTCA
genomic: TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttca ... aaattaatagATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA
EST: gi|116394338|gb|EG436930.1|EG436930
EST:     TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATT                         ATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA
genomic: TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttca ... aaattaatagATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA
EST: gi|116394354|gb|EG436946.1|EG436946
EST:     TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATT                         ATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA
genomic: TCTGTTTGATGTTGCTATGAACAATAATTTGATCTCGGTGGTTTGCCATTgtatccttca ... aaattaatagATATCACCAATGTCTGTATGGATGAGACAGCTGTATCTAGTGATCCGGTCA