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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacctctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag

Basic information

species Arabidopsis thaliana
transcript AT2G37160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 2
TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacc---tctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag
||   || |  ||||| ||||||| ||||||||||||||||||||  |||||||||| || ||||| |||||||| ||||| ||||| || || |||||||||   | | |   |      |  | | ||        ||||| || ||      |  |||| |    |  |||                  
TAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGgtataatgatcgggttagggtggatggattgtaaggattttgactttattcatgagaggtttcttgt-tcaatgtag---------------

upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 2
TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacctctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag
||   ||    | ||| | ||||| || |||||||||||||||||  |||||||||| || ||||| ||||| |||||||| ||||| || || |||||||||          || | ||     |||  | |  ||| || | |     | |   ||||   |||    |     || ||   | |||
TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGgta----------tattggtcggagtttgatgaattttaatataagaattttgg-atttgcttcatcagaggtttcttgttgcgtgtag

upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 2
TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacctctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag----
||   ||    | ||| | ||||| || ||||||||||| |||||  | |||||||| || ||||| ||||| |||||||| ||||| ||||| |||||||||          || | ||    ||||  |    ||| |   ||  |   ||||   |      || ||||||  ||  ||| |        
TAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACATACTTGATATTCAATGTCGGGGATGCAATTTTCATTAGTGATTTGAATTCGCAAGACAAGgta----------tattggtcagattttgatggattttaa---gaattttgggtttgcttcatggttcatgagaggtttcttgttgcgtgtag

upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 2
TACCTCAGCTACTAATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAGTGACTTGAACTCGCAGGACAAGgtaatcttacctctactcgttttgttttc--ttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttgatttag
||   |  |   || | | ||||| ||||||||||| ||||||||  | ||||||||||| ||||| || |||||  |||| |||||  |||| || |||||||| | |  | | || | |  | |||   | || | || || |  |  | |||    |||     |    |     || ||| || |||
TAATCCGACAGGTACTTCCAATTTTGATGGGAAAGGGACTTACTTGATTTTCAATGTTGGGGATGCAATATTTATCTGTGATTTGAATACGCAAGATAAGgtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttgg--aattggattttgagaggtttgttttttaatgtag