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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttttcttcttagcttcgttcattgttttgctttagctcttgtttttgaagttgatggagacagtgatgattgtgtaatgcgttggttttgttag

Basic information

species Arabidopsis thaliana
transcript AT2G27860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 2
ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatg-tgttttcttcttagcttcgttcattgttttgc--------tttagctcttgtttttgaagttgatggagacagtgatgattgtgtaatgcgtt--ggttttgttag----
| ||| ||||| || |||||||||||||| || || |||||||| |||||||| ||||| || |||||||||||||||||||| |||||||| ||||| ||||   | |||   |   ||| || |  | |        | | | | ||  ||||   |||  | |  |   || |||   ||   ||||||  | | | | |      
ACTATCAATCTGGCGGCGATCTGTACTCCCGCGGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCCCTTCCAGTGgtatgctgttggatgcttgtttgaattcgttttcgtccaaggataatattgttgttagtttttttgtttctcggaaatctgttgaagctgatgtgcgttttgatgtggctctttag

upper sequence: AT2G27860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 2
ATTATAAATCTTGCTGCGATCTGTACTCCAGCTGATTACAATACACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatg-tgtt---ttcttcttagcttcgttcattgtt------ttgctttagctcttgtttttgaagttgatggagac--agtgatgattgtgtaatgcgttggttt-tgttag---------------
| | | ||||| ||||||||||||||||| || || |||||||| |||||||| ||||| || |||||||||||||||||||| |||||||| ||||| ||||   |  || || |  |  ||  | |||      |    ||     |||| |||    ||   ||| |     ||| | |  |||| ||||||| |||  |||                 
ACTGTCAATCTGGCTGCGATCTGTACTCCCGCAGACTACAATACTCGTCCTCTCGATACGATTTACAGCAATTTCATTGATGCACTTCCAGTGgtatgctgttggatgtttgtttgaattatttttcgttcaaagataatgttgttatttgtctttttgtttctcggaaatctgttgaagctgatgta-tgcgttgatttgcgttttgatgtggctttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380180|gb|EG422772.1|EG422772
EST:     CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT                         GTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
genomic: CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttt ... gttttgttagGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
EST: gi|116380179|gb|EG422771.1|EG422771
EST:     CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT                         GTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
genomic: CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttt ... gttttgttagGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
EST: gi|116377085|gb|EG419677.1|EG419677
EST:     CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT                         GTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
genomic: CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttt ... gttttgttagGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
EST: gi|116377084|gb|EG419676.1|EG419676
EST:     CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT                         GTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
genomic: CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttt ... gttttgttagGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
EST: gi|116380174|gb|EG422766.1|EG422766
EST:     CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT                         GTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
genomic: CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttt ... gttttgttagGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
EST: gi|116380171|gb|EG422763.1|EG422763
EST:     CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTT                         GTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT
genomic: CACGTCCTCTTGATACTATCTACAGCAATTTCATTGATGCGCTTCCAGTTgtatgtgttt ... gttttgttagGTGAAATACTGTTCTGAGAACAACAAGCGTCTCATTCACTTTTCTACCTGT