1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggtacatacatgctctataaaactatgtatgtttttgtttctataaccatttatgattctttgacag
species | Arabidopsis thaliana |
transcript | AT2G26170.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAG GGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCCEST: gi|116482935|gb|EG525527.1|EG525527
genomic: TCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggt ... tctttgacagGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCC
EST: TCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAG GGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCCEST: gi|164002265|gb|ES026273.1|ES026273
genomic: TCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggt ... tctttgacagGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCC
EST: CTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAG GGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCC
genomic: CTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggt ... tctttgacagGGACAAGAGATGGTCTAAAATGAGAAACACCATCCTATCTCTCTATCAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtacaatggtacatacatgctctataaaactatgtatgtttttgtttctataaccatttatgattctttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA