1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaattcctcacaaataatctgtttttcttttgtgttttctctgttttaaatctcacttacattagggtttacatacag
species | Arabidopsis thaliana |
transcript | AT2G13360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|124760442|gb|EH850572.1|EH850572
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: CCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATEST: gi|125298796|gb|EL312881.1|EL312881
genomic: CCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCAT
EST: TGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGEST: gi|86054090|gb|DR349847.1|DR349847
genomic: TGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTG
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|124865423|gb|EH949860.1|EH949860
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: TACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|116484714|gb|EG527306.1|EG527306
genomic: TACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|301502319|gb|HO207859.1|HO207859
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGEST: gi|125233553|gb|EL247638.1|EL247638
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGG
EST: GACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTCGCTGCTAGTGGACGGTGTTTEST: gi|47828421|gb|CK118105.1|CK118105
genomic: GACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTT
EST: GACCGCGACCGGAGTTACCA-TGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|125249228|gb|EL263313.1|EL263313
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: CTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|125024272|gb|EL096541.1|EL096541
genomic: CTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGEST: gi|47829762|gb|CK119446.1|CK119446
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCG
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|301503194|gb|HO208734.1|HO208734
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTEST: gi|125281760|gb|EL295845.1|EL295845
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCT
EST: CTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|86054154|gb|DR349911.1|DR349911
genomic: CTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|125054036|gb|EL124913.1|EL124913
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGCCCGCACACTCCTCG ATCACTACAAGCATCCGGEST: gi|86054112|gb|DR349869.1|DR349869
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGG
EST: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTEST: gi|125288963|gb|EL303048.1|EL303048
genomic: GACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCT
EST: TACCAATGACATCTCTGCTGTCCGCACACTCCTCG ATCACTACAAGCATCCGGCTTTG
genomic: TACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaatt ... ttacatacagATCACTACAAGCATCCGGCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGgtcattaattcctcacaaataatctgtttttcttttgtgttttctctgttttaaatctcacttacattagggtttacatacag
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