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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaaagctttcttctactaatcccactttttaaactttgacctcagcgtggttaccgacatttttgtttcttttgtcaaatacag

Basic information

species Arabidopsis thaliana
transcript AT1G71830.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 2
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaaagctttcttctactaatcccactttttaaactttgacctcagcgtggttaccgacatttttgtttcttttgtcaaatacag-----------
  ||| | ||||||||  ||||||| |||||||| || || || ||||| ||||||||||||||||| ||||| |||   || ||||| || || |||||||||     | ||  ||  |     | |||| |   ||| |   ||   |      ||   |||||| | ||   | |  ||              
AAGATGCTAACAATGTGCTGCAGAGTTGGGATCCCACTCTGGTCAATCCATGCACATGGTTCCATGTAACTTGTAACCCTGACAACAGCGTGATCAGAGTgtaag----tttttgacagaattatcatttttaggcttgtcaaaagtaagaaatgtgatcattttgtgtgttgactgatctattttcctttcgcag

upper sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 2
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaaagctttcttctactaatcccactttttaaactttgacctcagcgtggttaccgacatttttgtttcttttgtcaaatacag------------
  ||| | ||||||||||||||||| |||||||| || || || ||||| || |||||||||||||| || || |||||||| |||||||| || |||||||||          |  | |    |  | | | |  ||    |||     ||||  ||  || |   | ||  |   || |  |             
AAGATGCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTTAATCCATGTACATGGTTCCATGTTACGTGTAACAACGATAACAGTGTTATCAGAGTgtaag--------ttgatgaaaaaagctctcatatattcgtatcaaaagtgttaatgatgttctc-ctactggttctaagtgtaccccctttcacag

upper sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaa-----------agctttcttctactaatcccactttttaaactttgacctcagcgtggttaccgacatttttgtttcttttgtcaaatacag
| ||| | ||||||||||||||||| |||||| | || || || ||||| || |||||||| || || || || |||| ||| |||||||| || |||||||||           |||| || | || | ||  ||   | | |    ||  |||    |||||    |  |      ||     |          
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag----------

upper sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM5G870959_T01 (Zea mays), 5'ss of exon 2
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaaagctttc-----ttctactaatcccactttttaaactttgacctcagcgtggttaccgacatttttgtttcttttgtcaaatacag
  |||   ||||| ||  ||||||| |||||||| || || || ||||| || |||||||||||||| ||||| |||   || ||||||||||| ||| |||||     ||     |  |  | || |  | ||  |         || | | |  | |      | | | |  ||||||  |       
AAGATAACAACAACGTGCTGCAGAGTTGGGATCCAACTCTGGTTAATCCATGTACATGGTTCCATGTTACTTGTAACCCTGATAACAGTGTCATCAGACTgtaagttgatcaaatatcttgttcattctcccttggaggtgaaagactgaccatt-tgaatattgtctgtttcccttttgctag------

upper sequence: AT1G71830.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
TTGATCCAAACAATGTCTTGCAGAGCTGGGATCCTACGCTAGTGAATCCTTGCACATGGTTCCATGTCACTTGCAACAACGAGAACAGTGTCATAAGAGTgtaaagctttcttct-actaatcccactttttaaactttgacctcagcgtg----gttaccgacatttttgtttcttttgtcaaatacag--------------------------------------------
  ||||| ||||||||  ||||||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||| || || ||||| ||||||||||||     | | ||   | ||  |  || | |        |      ||     ||  |  | |  | |     |||| |||||| |                                              
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgtggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag