1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTCTGTTCCGATTGATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatctcttactcttatgcttatgtagggttttcgattttgagaaaatttgggattcgattttgaatttattagggttttgttttggttttttgtttag
species | Arabidopsis thaliana |
transcript | AT1G56450.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACT GTACCCATATGTTACTGGAACTTCAGTTGTTGCAATCAAGTACAAAGATGGEST: gi|116438502|gb|EG481094.1|EG481094
genomic: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatct ... ttttgtttagGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGG
EST: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACT GTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGGEST: gi|86055051|gb|DR350808.1|DR350808
genomic: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatct ... ttttgtttagGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGG
EST: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACT GTACCCATATGTTACTGGAACTTCAGTTGTTGCAATCAAGTACAAAGATGGEST: gi|163985673|gb|ES154674.1|ES154674
genomic: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatct ... ttttgtttagGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGG
EST: TGAAGATCGCAGAAGAAGAATCACAAAGAACACT GTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGGEST: gi|86055050|gb|DR350807.1|DR350807
genomic: TGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatct ... ttttgtttagGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGG
EST: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACT GTACCCATATGTTACTGGAACTTCAGTTGTTGCAATCAAGTACAAAGATGGEST: gi|164203689|gb|ES066818.1|ES066818
genomic: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatct ... ttttgtttagGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGTACAAAGATGG
EST: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACT GTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGT
genomic: GATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatct ... ttttgtttagGTACCCATATGTTACTGGAACTTCAATTGTTGCAATCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCTGTTCCGATTGATAACGGAGATTCTATGAAGATCGCAGAAGAAGAATCACAAAGAACACTgtaaaaatctcttactcttatgcttatgtagggttttcgattttgagaaaatttgggattcgattttgaatttattagggttttgttttggttttttgtttag
- - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC