1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCATACTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAATCGAAAGACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaaacgcttgtttgattttcttagatttctgaagttctgactccttataatatatctaatatgttgcatttccaactctcatgttcag
species | Arabidopsis thaliana |
transcript | AT1G43860.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATATGCATCGAT ATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAGEST: gi|86041633|gb|DR337388.1|DR337388
genomic: AATATGCATCGATgtatgttaaa ... tcatgttcagATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
EST: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGAT ATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAGEST: gi|86041632|gb|DR337387.1|DR337387
genomic: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaa ... tcatgttcagATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
EST: ACTTGATGAAGTCGTTTGGATCAGATGATCATACNAAAATATGCATCGAT ATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAGEST: gi|86041634|gb|DR337389.1|DR337389
genomic: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaa ... tcatgttcagATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
EST: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGAT ATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAGEST: gi|86041636|gb|DR337391.1|DR337391
genomic: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaa ... tcatgttcagATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
EST: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGAT ATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAGEST: gi|86041635|gb|DR337390.1|DR337390
genomic: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaa ... tcatgttcagATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
EST: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGAT ATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
genomic: ACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaa ... tcatgttcagATTTTGGAGAAAGGAGAGCTTCAAGTTGCTGGAAAAGAAAGAGAATCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATACTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAATCGAAAGACTTGATGAAGTCGTTTGGATCAGATGATCATACGAAAATATGCATCGATgtatgttaaaacgcttgtttgattttcttagatttctgaagttctgactccttataatatatctaatatgttgcatttccaactctcatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG