1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTgtgagatttcactctctctgtaatttcactctgcttctgctctgttttaatttttgagttgttgattaagtaaatggtttctttgtttgtttgtttgtttgtggtttcag
species | Arabidopsis thaliana |
transcript | AT1G21065.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCT TACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGEST: gi|116377317|gb|EG419909.1|EG419909
genomic: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTgtgagatttc ... gtggtttcagTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATG
EST: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCT TACAACACACAAGTGCTTCTCTGACAATCAATGACAATTATGATCCACATGEST: gi|86028440|gb|DR324193.1|DR324193
genomic: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTgtgagatttc ... gtggtttcagTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATG
EST: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCT TACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATGEST: gi|116422128|gb|EG464720.1|EG464720
genomic: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTgtgagatttc ... gtggtttcagTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATG
EST: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCT TACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATG
genomic: AATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTgtgagatttc ... gtggtttcagTACAACACACAAGTGCTTCTCTGACAATCAATGAGAATTATGATCCAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTGAAAGAAATAAGGGAAGACTTGTCAGATTTCAATTGTGGTCTTGCTCATGTCTTCTgtgagatttcactctctctgtaatttcactctgcttctgctctgttttaatttttgagttgttgattaagtaaatggtttctttgtttgtttgtttgtttgtggtttcag
- - - - - - - - GGAAGA