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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTTTTTCATCGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAAgtatgtaatcaataatctttagttacttcaacatgtaattacttctatattgaccgtatttaattgattttacag

Basic information

species Arabidopsis thaliana
transcript AT1G08930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125080471|gb|EL142056.1|EL142056
EST:     CGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAA                         TACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGG
genomic: CGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAAgtatgtaatc ... gattttacagTACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGG
EST: gi|125080621|gb|EL142154.1|EL142154
EST:     CGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAA                         TACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTG
genomic: CGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAAgtatgtaatc ... gattttacagTACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTG
EST: gi|124929784|gb|EL007299.1|EL007299
EST:     CGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAA                         TACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCT
genomic: CGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAAgtatgtaatc ... gattttacagTACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCT
EST: gi|124906569|gb|EH980649.1|EH980649
EST:     CTCTCTCCGTTGCAGAA                         TACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG
genomic: CTCTCTCCGTTGCAGAAgtatgtaatc ... gattttacagTACTCAATGTTCGGGTCGATCTTGACATTAGGAGGCTTGATCGGTGCAG