Sequence
atgc intronic sequence ATGC exonic sequenceGGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaaatggaaactcctagaacacataaaggatatggtaattatttcattggcaccaaagtccgaccttctcttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G15290.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 22
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaaatggaaactcctagaacacataaaggatatggtaattatttcattg-gcaccaaagtccgacc-ttctcttgcag
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GGCTTGAATATTTTGAATCAAAAGCCATAGAGCAGCAAGAAGCAACTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGgtactaacatggtagcccccatttactgtgtttcaaacaggttatatttcagggtacatatatatttaaccactttcatgcag
upper sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 20
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaa-atggaaactcctagaacacataaaggatatggtaattatttcattg-gcaccaaagtccgacct-tctcttgcag
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GGCTTGAGTATTTTGAATCAAAAGCCCTAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTGAGgtactaaacatggtatcccccatttactgtgtttcaaacaggttgtatttcagggtatatatatatttaacctctttcatgcag
upper sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 21
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaaatggaaactcctagaacacataaaggatatg----gtaattatttcattgg-caccaaagtcc---gaccttctcttgcag
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GGCTTGAATATTTTGAATCAAAAGCTTTAGAGCAGCAAGAAGCAGCAAGAAATGGAACTCCAAAGCCAGATGCATCTATTGCAAGCAAAGGCCACCTTAGgtattgatatggta-ttcccatattacttggtttttatgctgtgtgactatttcttggaactccaaaacctttgaccctttttttgcag
upper sequence: AT1G15290.1 (Arabidopsis thaliana), 5'ss of exon 19
lower sequence: PP1S73_28V6.1 (Physcomitrella patens), 5'ss of exon 16
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgta----ctaaaatggaaactcctagaaca--cataaaggatatggtaattatttc-attggcaccaaagtccgaccttctcttgcag------------
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GGCTAGAGTACTTCGATTCTAAAGCGCTAGAACAGCAGGAAGCTGCCCGAATGGGAATGCCAAAGCCTGATGCGTCAATTGCTAGCAAAGGTCACCTAAGgtgatttccgcattcacgtcactttgaatagtcttgcaatttacgagaattagaaggaaaaaggtcaatgatatgcgtgttgttggggcatttattgccgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116431561|gb|EG474153.1|EG474153EST: AATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAG TGTATCAGATCTCCTGGACTATATAAGTTCTGATCCAGACACTAAGGGAAA
genomic: AATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaaat ... tctcttgcagTGTATCAGATCTCCTGGACTATATAAGTTCTGATCCAGACACTAAGGGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTCGAATATTTTGAATCAAGAGCCATAGAGCAGCAGGAAGCAGGCCGAAATGGAATCCCAAAGCCTGATGCTTCCATCGCGAGCAAAGGCCACCTTAGgtactaaaatggaaactcctagaacacataaaggatatggtaattatttcattggcaccaaagtccgaccttctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG