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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag

Basic information

species Arabidopsis thaliana
transcript AT4G29900.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM5G892495_T02 (Zea mays), 5'ss of exon 7
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
|| || |||||||| ||||||||||| ||||| || || ||||| ||||| ||||| |||||||| || || || |||||| |||| | |          ||  ||  ||||| | | |       | |||    |||  ||||  ||||      |  ||||| |   || | || | || ||| |  |  ||||   ||     |    | | |                
GTTCGGAGGCTTTCTGCCTGTGAAACAATGGGTTCAGCGACAACTATTTGTAGTGACAAGACTGGTACATTAACATTAAACCAGgttagt----------tgtttttattttgaaatggtccttgtaattattctttattagtt--ggtac-----tatctagtaaattgcctctggttttgtgattgtttgaccccggaactttttgttgttcaag---------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 19
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgcc----ttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
||| | |||||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||  | ||  |||| | |  || | |  |         || ||| || |   ||    |    |||| |||  |||   |        || | | |  |    || |  | |                                                    
GTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGgttagttctgattcagtattgaaaccctatttataatatttatggtaagctacacatacttgttggagagcacttgttgcaaatattttaattctattgt----------------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 16
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
||| | |||||||| |||||||| || |||||||| || ||||| ||||||||||||||||||||||| |||||  | ||  |||| | |  || |  || |  ||       ||||  |||       ||| | |||       ||||| |                                                                                
GTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGGTTAgttctgat--tcagtattgaaaccctattccctatt---tataatattta-------tggtaag--------------------------------------------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
||  | |||||||| |||||||| |||||||| ||||| ||||| || || |||||||||||||| || |||||| | ||  |||| | |  |||||||     || | | |  ||||    | ||| |      |||  | |  |    |     ||| | |     |  | |||| ||| |                                                 
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctgcattttatatgttgatttaaacaaacaatatttctttataactactta-gttcaacttcttggagggtacttcttgcaattgttt-----------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 16
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
||  | |||||||| ||||| || |||||||| ||||| ||||| || ||||||||||||||||| || |||||  | ||  |||| | |  ||||||| |      ||  | ||||   | | ||| |      ||   | |  |   ||   |||          | ||  |||| ||| |   |||| |                                        
GTAAGGAGGCTTTCTGCCTGCGAGACCATGGGCTCTGCCACAACCATATGCAGTGATAAGACTGGTACATTGACTATGAATCAGgttagttgtggtgctgt-----tttgatatattgatttaaacaatatttctttgtaactacttacatcaacttcttgga----gggcacttgcaattgtttcttgtttt---------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
|| || |||||||| || ||||| |||||||| ||| | || || ||||||||||||||||| |||||| | || || ||  ||||  ||  |   ||  |  |||  ||   |||||  | ||  |  |      | |  | ||   ||| ||  ||   ||   | |  |||   |||||||| |                                             
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttattacatattttgtcactgaagtcctgaat-ctggcttaattatttgaatttgaag--gttaaatttatttattttgagt---------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: EFJ25508 (Selaginella moellendorffii), 5'ss of exon 15
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag
|| |||    |  | ||||| ||||| ||||| |||||||| || || |||||||||||||| |||||  ||||||| ||| |||| |   ||| |     |      || ||    || | ||  || |  ||                                                                                                  
GTCCGTCATTTGGCTGCCTGCGAAACAATGGGATCTGCAACGACTATCTGCAGTGATAAGACCGGAACCCTGACCTTGAACCAGgt-atgattgttatgacgggaaagttatg---gtgttgacttaccttgcag-------------------------------------------------------------------------------------------------