Sequence
atgc intronic sequence ATGC exonic sequenceTGGGTTAGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatgtaccacaccatgtcggtgtttctataacgttatgatctctcatcactgctttttatcccttcaatgatgatgttatctatgcttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G46220.3 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G46220.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA12G07980.1 (Glycine max), 5'ss of exon 15
TGGGTTAGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatgtac---cacacc-atgtcggtgtttc--tataacgttatgatctctcatcactgctttttatcccttcaatgatgatgttatctatgcttgcag-
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TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGTAAGgtatttatgtttacatttatgtaaaaacttaaatataattttttggatgttagattctactcaattttcacacaagaatattctttgttaataatgaaaa
upper sequence: AT3G46220.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA11G15470.3 (Glycine max), 5'ss of exon 8
TGGGTTAGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatgtac---cacacc-atgtcggtgttt-ctataacgttatgatctctcatcactgctttttatcccttcaatgatgatgttatctatgcttgcag--
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TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgtttacatttatgtaaaaacttactataatttactggaggcttgattctactgctcaattttcacacaagaatattctttgttaataatgaa
upper sequence: AT3G46220.3 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv06s0004g03970.t01 (Vitis vinifera), 5'ss of exon 16
TGGGTTAGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatg--tacca-caccatgtcggtgtttctataacgttatgatctctcatca--ctgctttttatcccttcaatgatgatgttatctatgcttgcag---
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TGGGTTACTCTTGAAAAAGCTTGATAAGAAATTGGAAAGAACACTCCTGCATTCATATCGTAAGgtacacctactgtcaataattcaagataattgaactgttctcttcacaaataggtttgctttatttattattattattattattat-tattattatatttaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164076377|gb|ES124552.1|ES124552EST: ACTGGAAAGGACACTCCTACATTCATATCGTAAG GATTTGATATCTCAAGTTTCCACCGAATCAGACCCTATTGCACTTCTCGCT
genomic: ACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatgtacca ... atgcttgcagGATTTGATATCTCAAGTTTCCACCGAATCAGACCCTATTGCACTTCTCGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGTTAGTCTTGAAGAAGCTTGACAAAAAACTGGAAAGGACACTCCTACATTCATATCGTAAGgtatgtaccacaccatgtcggtgtttctataacgttatgatctctcatcactgctttttatcccttcaatgatgatgttatctatgcttgcag
- - - - - - - AGAAGC