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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaacattaatatttcatgtttttattaagatatttgtctaagaaatgttactaacgatgtgtgaactatatatgaccaaaatttatagcatagtggggttagttagacccaagtttcaaccagaaatgtgaatttggagctatatacaaaaacagcaacaacagaatctaataaaattttattttgcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08930.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124791240|gb|EH880919.1|EH880919
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAG                         ATATTTCCGATGAATGTGAAAGTG
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTG
EST: gi|86059161|gb|DR354918.1|DR354918
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAC                         ATATTTCCGATGAATGTGAAAGTGTCACCTGGGACCTTAGTTACTGTAACC
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAGTTACTGTAACC
EST: gi|124865560|gb|EH949997.1|EH949997
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAG                         ATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAG
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGACCTTAG
EST: gi|124914922|gb|EH988796.1|EH988796
EST:     TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAG                         ATATTTCCGATGAATGTGAAAGTGTCAGCTGGGA
genomic: TGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaac ... ttgcttgcagATATTTCCGATGAATGTGAAAGTGTCAGCTGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAGAACTCACTCCCATCTTCACTTGCATCGGCGTCTTGGGTCACATTGTGTCATTTGCCATGGGAATGGGAGGACTACCATGGATTATAATGGCTGAGgtataccaacattaatatttcatgtttttattaagatatttgtctaagaaatgttactaacgatgtgtgaactatatatgaccaaaatttatagcatagtggggttagttagacccaagtttcaaccagaaatgtgaatttggagctatatacaaaaacagcaacaacagaatctaataaaattttattttgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA