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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGgtaaattaataatagataatgtgatacgctagagtgtggatctgaattatttcatcagagagatatttttccttaagcttatacttcatcttctaatgattttcag

Basic information

species Arabidopsis thaliana
transcript AT5G41880.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os05g29010.2 (Oryza sativa), 5'ss of exon 13
GTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGgtaaa---ttaataatagataatgtgatacgctagagtgtg-gatctgaattatttcatcagagagatatttttccttaagctta--tacttcatcttctaatgattttcag
| ||||| |||||||| || || || |||||||||||||| ||||||||   | ||||||||||||| ||||||||      |||     |   | |   | |  | | | | || ||||| | |||  |  |  ||   ||  || | || || || |  |  |  | ||  | |   |   |||
GCCGTGTTTGTGTTCCAATCGATCCAAATAACTGTGATGATTTTGATCCTACGACAGTTCCAACTCTGTCACAGgtgtgtccttagagccaagcattaaaaaaaacaatattctgagatctaatttacct--ttggaagcatcattatgct-aaactgacttgttgaaactgttgaacttaaccag

upper sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os05g29010.1 (Oryza sativa), 5'ss of exon 9
--------------------------GTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGgtaaat---taataatagataatgtgatacgctagagtgtg-gatctgaattatttcatcagagagatatttttccttaagctta--tacttcatcttctaatgattttcag
                          | ||||| |||||||| || || || |||||||||||||| ||||||||   | ||||||||||||| ||||||||   |   ||     |   | |   | |  | | | | || ||||| | |||  |  |  ||   ||  || | || || || |  |  |  | ||  | |   |   |||
ACAATTGTTTTGAAATCTTTCCCTAGGCCGTGTTTGTGTTCCAATCGATCCAAATAACTGTGATGATTTTGATCCTACGACAGTTCCAACTCTGTCACAGgtgtgtccttagagccaagcattaaaaaaaacaatattctgagatctaatttacct--ttggaagcatcattatgct-aaactgacttgttgaaactgttgaacttaaccag

upper sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G439297_T01 (Zea mays), 5'ss of exon 2
GTCGTGTCTGTGTTCCTATTGACCCGAATAACTGTGATGAGTTTGATCCATTGGCAGTTCCAACTCTTTCACAGgta-aattaataatagataatgtgatacgctagagtgtggatctgaattatttcatcagagagatatttttccttaagcttatacttcatcttctaatgattttcag
| ||||| |||||||| |||||||| | |||||||||||| ||||||||   ||| ||||| ||||| |||||||||   |  |||     ||   ||| | ||   |      || | |  |  |||  |  ||    ||  | |  |     ||| ||  | |   |       | |||
GCCGTGTTTGTGTTCCGATTGACCCCAGTAACTGTGATGATTTTGATCCTGCGGCTGTTCCGACTCTATCACAGgtatggtccatagagcctagcatgagaagcactaac----atttcatatccttctcccaagcatcatggtgcaatgctgatatgctaaaacaagtgcactcatacag