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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGCGCTTAATTCTTGACACgtaagaaataaattttctaaattatatactaccccaataggctttatatatctaattgatgccttctgttccttcatgttatcttcaacatattttctttccatctctctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G40760.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 14
TAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGCGCTTAATTCTTGACACgtaagaaataaattttctaaattatatactaccccaataggctttatatatctaattgatgccttctgttccttcatgttatcttcaacatattttctttccatctctctgcag
| || |||   || || |||||||| ||||||||||| ||||| |||||||||||||| ||  | || |||||||| || || ||| |||||||||||||||| |       |||  ||  | ||| |     |   |      | | ||     || || |      |   |     || | | |||   |  |   |||    |        
TGGAGATGTCAACAGTTCAAAGTGAGCTAGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatgttccct-tttcgtagttcatagatatggcttgtcaatggtttctag--ggttaatacag---atgtataagaattgtttacaaaggacctgtattcatgat--------

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 14
TAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGCGCTTAATTCTTGACACgtaagaaataaattttctaaattatatactaccccaataggctttatatatc--taattgatgccttctgttccttcatgttatcttcaacatattttctttccatctctctgcag
| || |||  ||| || |||||||| || |||||||| ||||| |||||||||||||| ||  | || |||||||| || || ||| |||||||||||||||| |        || ||   |  ||    |     || |||| |  || |    ||  | |        |   |     || | | ||| ||   || | | |||          
TGGAGATGTCTACGGTTCAAAGTGAGCTTGACTTGTCATATGGACAACGGTATCAAGGAGTAACCATTCCTGAGGCTTATGAACGCCTAATTCTTGACACgtatg--------ttcctttttcgtagttcatagttatgggctgtcaatgttagcaagggttaatacagatgtatatgaattgtttacaa-atgacttgtattcatgat-------

upper sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 14
TAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGCGCTTAATTCTTGACACgtaagaaataaattttctaaattatatactaccccaataggctttatatatctaattgatgccttctgttccttcatgttatcttcaacatattttctttccatctctctgcag
| || |||   ||||| ||||| |||||||||||||| ||||| ||||| ||||||||  |  | || || ||||| || || ||  |||||||||| ||||| ||  | |  |   |     ||  |  |      | ||| ||  ||   |||   ||   | ||| | |    |     | ||||  ||| |                   
TTGAAATGTCAACTGTACAAAGCGAACTAGACTTGTCATATGGACAACGTTATCAAGGGTTTACAATTCCAGAGGCTTATGAACGTCTAATTCTTGATACgtatgacctcatatccattctcaattcagaatatgttttggcatt-cattattaaaccatatgtgctgctaccattttaagccatcaatttatgtgggcat-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741249|gb|AU226602.1|AU226602
EST:     CCTGAGGGCATACGAGCGCTTAATTCTTGACAC                         AATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAG
genomic: CCTGA-GGCATACGAGCGCTTAATTCTTGACACgtaagaaata ... ctctctgcagAATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAG