1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAAgtgagttttgattcactttctttaaattacagtctaaacatatatagagagactaaatatcaaacttgtcacag
species | Arabidopsis thaliana |
transcript | AT4G16660.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAA GACTTCTCTGTGGAGCAAACCGGTGTTCACGTCCACTGAAGTGTACGCTAAEST: gi|124781814|gb|EH871757.1|EH871757
genomic: GCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAAgtgagttttg ... cttgtcacagGACTTCTCTGTGGAGCAAACCGGTGTTCACGTCCACTGAAGTGTACGCTAA
EST: GCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAA GACTTCTCTGTGGAGCAAACCGGTGTTCAEST: gi|86029396|gb|DR325149.1|DR325149
genomic: GCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAAgtgagttttg ... cttgtcacagGACTTCTCTGTGGAGCAAACCGGTGTTCA
EST: GCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAA GACTTCTCTGTGGAGCAN-CCGGTGTTCACGTCCCACTGAAGTGTACGCTA
genomic: GCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAAgtgagttttg ... cttgtcacagGACTTCTCTGTGGAGCAAACCGGTGTTCACGTCC-ACTGAAGTGTACGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAAgtgagttttgattcactttctttaaattacagtctaaacatatatagagagactaaatatcaaacttgtcacag
- - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA