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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGTAATGCTTTAGAATATGGGTTGGCTCCTACAGGTGGCTGGGGATTAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGgtcactctcttacctccaaatttacacttcagtgaataatctattcgttttgactgcactcatgatatggaatatgttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G11710.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083865|gb|DR379624.1|DR379624
EST:     TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAG                         GAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGCAGCC
genomic: TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGgtcactctct ... gttgttacagGAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGGAGTCAGCAGCC
EST: gi|125102470|gb|EL157218.1|EL157218
EST:     TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAG                         GAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGG
genomic: TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGgtcactctct ... gttgttacagGAGGTTCTTTTCTTCCCGGCAATGAGGCCACCACAGGAGG
EST: gi|163993957|gb|ES100925.1|ES100925
EST:     TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAG                         GAGGTTCTTTTCTTCCCGGC
genomic: TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGgtcactctct ... gttgttacagGAGGTTCTTTTCTTCCCGGC
EST: gi|164158981|gb|ES018520.1|ES018520
EST:     TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAG                         GAGGTTCTTTTCT
genomic: TAGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGgtcactctct ... gttgttacagGAGGTTCTTTTCT
EST: gi|125294742|gb|EL308827.1|EL308827
EST:     AGGAANAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAG                         GAGGTTCTTTTCTTCCCGGCAA
genomic: AGGAATAGACAGACTCTCTATGCTTTTGACCGACTCACTGAACATCAAGgtcactctct ... gttgttacagGAGGTTCTTTTCTTCCCGGCAA