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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATCCTCTATACTGCTGCTATTGGTGATATAGTAGATGGAACTGACACAACCCATGATTTCAACTTTTTCTCTCTTGTTTATGAATGGCCTAAAGACgtaagtgtttctttttttgatgttctcaggatatttttcatataaactctcttccttgtcattcatgcttgtggtattatcctcttaatctgcttttatt...

Basic information

species Arabidopsis thaliana
transcript AT2G25730.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25730.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os01g40990.3 (Oryza sativa), 5'ss of exon 15
GTTTATCCTCTATACTGCTGCTATTGGTGATATAGTAGATGGAACTGACACAACCCATGATTTCAACTTTTTCTCTCTTGTTTATGAATGGCCTAAAGACgtaagtgtttctttttttgatgttctcaggatatttttcatataaactctcttccttgtcattcatgcttgtggtattatcctcttaatctgcttttatt-
 || ||  | |||| |||  | |||||||| ||||| ||||||||||| || || |||||||||||||  |||||  | || |||||| |||| ||||| |||||   ||     ||| |  |     |        ||| || || ||| | | || ||| |  |  | ||  |    || |  || |      ||    
TTTCATAATATATATTGCAACCATTGGTGACATAGTGGATGGAACTGATACGACTCATGATTTCAACTACTTCTCCTTAGTCTATGAAAGGCCCAAAGATgtaagccatttacaattttacatatcatgttctgaagtcagatcaaatctatacattttcacttttaat-gtttttccttctttgtactggaaacttgaaa

upper sequence: AT2G25730.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G327311_T02 (Zea mays), 5'ss of exon 7
GTTTATCCTCTATACTGCTGCTATTGGTGATATAGTAGATGGAACTGACACAACCCATGATTTCAACTTTTTCTCTCTTGTTTATGAATGGCCTAAAGACgtaagtgtttctttttttgatgttctcaggatatttttcatataaactctcttccttgtcattcatgcttgtggtattatcctcttaatctgcttttatt-----
 || ||  | ||||||||  | |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||  | || ||||||||||| ||||| |||||   |  | | |    | |  ||  ||| |||||  | |    |   | | |||  | || ||  || |  || | | | || |     ||  |||     
CTTCATAATATATACTGCAACCATTGGTGACATAGTTGATGGAACTGACACAACTCATGATTTCAACTATTTCTCGTTAGTCTATGAATGGCCAAAAGATgtaagatgtattctgtaccttctattc--gatgttttttttcttgtattcatacgttg--aatcttgaatgaga-atcaacatattcacaaatttaaattgatat

upper sequence: AT2G25730.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 15
GTTTATCCTCTATACTGCTGCTATTGGTGATATAGTAGATGGAACTGACACAACCCATGATTTCAACTTTTTCTCTCTTGTTTATGAATGGCCTAAAGACgtaagtgtttctttttttgatgttctcaggatatttttcatat---aaactctcttccttgtcattcatgcttgtggtattatcctcttaatctgcttttatt
 ||||| ||| ||| |||||| |||||||| ||||| ||||| || || ||||| ||||||||||| |||||||| ||||| ||||| ||||||||||| |||||  ||  |||||     | |   |  ||  | |    ||   ||  ||   | | || ||||  |   | || |  |  |     ||| |  |      
ATTTATACTCCATATTGCTGCAATTGGTGACATAGTTGATGGGACAGATACAACTCATGATTTCAATTTTTTCTCGCTTGTATATGAGTGGCCTAAAGATgtaagatttcttttttccctgggttaaactatcctgtctggatttgaagatcatgttcatgacatttgttactttgttgattgcacaacaatgttatagg---