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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcataggaataacgctgatgcgcttttaccttcgttccctttctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G73860.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatg-tattcactgt-------tgtttctgagagtaagatttcataggaataacgctgatgcgctt---ttaccttcgttccctttctttcag---------
 ||    || ||   ||| ||  |||| ||||| |||||||| || ||||||||||| ||||| ||||| || || |||||||||||||| || ||||||||||| |  || | |        | ||  |   | | |  |     || | ||    |||     ||    | | | |  | || || || ||          
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatgatgctctcagcataagaatattgatctaatttatgtcattgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtat--gtattcactgttgtttctgagagtaagatttcataggaa-taacgctgatgcgcttttaccttcgttccctttctttcag-------------------------------------------------------------
 || || |||||   ||||||| || | ||||| |||||||| | |||||||||||| ||||| ||||| || || || ||||| |||||||| |||||||||      || || | | |||    |  | ||  ||  |   || | |   |||| |  |||||      ||    |  || |||                                                             
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgat-cttttttattggtattgtactggtt-cagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgtt------gtttctgagagtaagatttcatag--gaataacgctgatgcgcttttaccttcgttccctt-tctttcag-------
 || || || ||   |||  || |||| ||||| |||||||| | ||||||||| || ||||||||||| || || || ||||| ||||| || |||||||||| || | ||||||       ||   || || ||   | |   |   | || |  ||  |   || ||  ||   || ||| ||||| |        
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttact-actgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgt--------tgtttctgagagta-----agatttcataggaataacgctgatgcgcttttacc--ttcgttccctt---tctttcag
 ||    || ||  | || ||  |||| ||||| |||||||| ||||||||||| || ||||||||||| || || |||||||| |||||  ||||||||||||| |   |            | ||| |   | ||     ||||| | |    ||   |  |||    ||  |     | ||| |  |   |   ||||
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggag--gatatatttacaataacttgtttcaatgaattgctcag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgta-tgtattcactgttgtttctgagagt----aagatttca-taggaataacgctgat-gcgcttttaccttcgttccctttctttcag------
 ||||| ||||||  ||| ||| |  | ||||| || ||||| | ||| |||||||| ||||||||||||||||| || || || |||||||| || |||||| | ||       |  |     | | |    |  | | || ||| ||||   |||||   | | |    || |||    || ||| |       
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcataggaataacgctgatgcgcttttaccttcgttccctttctttcag
 | | | ||||||  | |  |  |  | ||||||||||||||||  ||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||| | |        | | | |   | | |   ||  |||  | |    | |  |  || ||       ||  | | | | ||
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatcattcatcattt-tagataaaggaattactca-ttctataagatgtcattatttcttag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA05G35130.1 (Glycine max), 5'ss of exon 12
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcata-ggaataacgctgatgcgcttttaccttc-----gttccc--tttctttcag
 |  || |||||   | |  |  | || ||||| || |||||||| ||||| ||||||||||| |||||||| || || |||||||||||||||||||||||||| |  | |||       |||   | |  | |||||    ||     ||| |   || | | |||     | | ||    | | ||||
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACAATGgtatgaaccctctgaataaattgattttta--tctcatacatcatgttattgaaggaattcttcattctataagatgccaacctttctcag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA08G04580.1 (Glycine max), 5'ss of exon 6
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcata-ggaataacgctgatgcgcttttaccttc-----gttccc--tttctttcag
 |  || |||||   | |  |  | || ||||| || ||||| || ||||| ||||||||||| |||||||| || || ||||||||||||||||| |||||||| |  | |||    |  |||   | |  | |||||    ||     ||| |   || | | |||     | | ||   || | ||||
ATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACGATGgtatgaaccctctgaatatattgattttta--tctcatacatcatgctattgaaggaattcttcattctataagatgccaacttttctcag

upper sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 13
----CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcataggaataacgctgatgcgcttttaccttcgttccctttctttcag
     | || | | | ||||    |  |  | ||||| |||||||| |  ||||| ||||||||||| ||||||||||| || | ||| |||||||| ||||||||| | |     | |  |  |  | |    ||||| |    |||  ||| |                                
GTGTATGTTGAAATACAAGATT--TTATACGATCAGTGCTTGATGGCTTTAATGTATGTATATTTGCTTATGGCCAGACTGgtttaggaaaaacttacacaatggtaagcaact-ttatattcacacatatattgattttaatttaatt-cgccgtcttag--------------------------