1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATGgttagattataatatttttattcaatcaattgtattattagttatgactttcttcatgagactaaagacaagctaatttttatataaatttaaacag
species | Arabidopsis thaliana |
transcript | AT1G08930.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATG GCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTEST: gi|124834452|gb|EH918891.1|EH918891
genomic: CAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATGgttagattat ... atttaaacagGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTT
EST: TGGGGAGGAGAACGCTCCTAATG GCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACEST: gi|124729306|gb|EH820708.1|EH820708
genomic: TGGGGAGGAGAACGCTCCTAATGgttagattat ... atttaaacagGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTAC
EST: TGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATG GCTTCTTGTTCTGCAATGGGTTEST: gi|124835485|gb|EH919924.1|EH919924
genomic: TGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATGgttagattat ... atttaaacagGCTTCTTGTTCTGCAATGGGTT
EST: TCGATAAAATGGGGAGGAGAACGCTCCTAATG GCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTACEST: gi|124781912|gb|EH871855.1|EH871855
genomic: TCGATAAAATGGGGAGGAGAACGCTCCTAATGgttagattat ... atttaaacagGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTAC
EST: GGAGAACGCTCCTAATG GCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTAC
genomic: GGAGAACGCTCCTAATGgttagattat ... atttaaacagGCTTCTTGTTCTGCAATGGGTTTGAGTGCTTTGCTCTTAAGTGTTTCTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAAAAGCAATGCTGGCAACAGTCCTAGTCGATAAAATGGGGAGGAGAACGCTCCTAATGgttagattataatatttttattcaatcaattgtattattagttatgactttcttcatgagactaaagacaagctaatttttatataaatttaaacag
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA