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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGgtataagctttgtacctttttatgatcaatttgtgtagatgatgtatcattgttctttagaaaaaaaggaaaaaagcgtttggttacaagtttaaaaccttaacag

Basic information

species Arabidopsis thaliana
transcript AT5G07290.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G451716_T01 (Zea mays), 5'ss of exon 13
AATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGgtataagctttgtacctttttat-------gatcaatttgtgtaga-tgatgtatcattgttctttagaaaaaaaggaaaaaagcgtttggttacaagtttaaaaccttaacag
||||| |||||||| || ||||| ||||||||| | ||| | ||||| ||||||||||| |||||||||||   |   |   || |  |||        ||  ||  | ||  ||   | ||| |||| |  |    ||  |||      ||   | |  | |||||                
AATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAGgtgagattctaaaacatacttaaaaaaacagacgaacctatgaggagctaggtagcattttattaagaaattaaactccccaaatttgtcttgacaagga--------------

upper sequence: AT5G07290.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM5G814700_T01 (Zea mays), 5'ss of exon 3
AATAAATGCAATGTCGGATATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGgtataagctttgtacctttttatgatcaatt----tgtgtagatgatgtatcattgttctttagaaaaaaaggaaaaaagcgtttggttacaagtttaaaaccttaacag---------------------------------------------------
|||||||| |||||||| ||||||||||||||| | | | | ||| |  ||||  ||||||||||| ||||   |  | |  |  |   || |  | | |     ||| || | |||  |  ||   |||| ||  ||     |      |     ||   | ||  | |   || |                                                     
AATAAATGTAATGTCGGCTATGCTTTCATCAACATGACCAATCCTCAGCATATCATTCCGTTTTATCAGgtgagaattattcaattaaataagtgctactgtatcgtgcagtt-atggctattttgacttttgatcaacttatatggcttgccaaatttgtacttcgataaaatatccatctggaacatggatgtgtgctatcctgagctattttttcatcgtttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116455509|gb|EG498101.1|EG498101
EST:     ATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAG                         GCATTCAACGGTAAGAAATGGGAAAAGTTCAACAGCGAGAAGGTGGCATCG
genomic: ATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGgtataagctt ... accttaacagGCATTCAACGGTAAGAAATGGGAAAAGTTCAACAGCGAGAAGGTGGCATCG
EST: gi|125041850|gb|EL114119.1|EL114119
EST:     ATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAG                         GCATTCAACGGTAAGAAATGGGAAAAGTTCAACAAGCGAGAAGGTGGCA
genomic: ATGCTTTCATCAACCTTATCGAACCTGAAAATATTGTTCCGTTTTATAAGgtataagctt ... accttaacagGCATTCAACGGTAAGAAATGGGAAAAGTTCAACA-GCGAGAAGGTGGCA