Sequence
atgc intronic sequence ATGC exonic sequenceGAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtgaattttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G03650.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 12
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtga--attttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag
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GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaacacgttaatcgctacttccctttacaaagta-tcattattcatatgcattaatctctattgtgtttgccaacat-ttttatccttatacag---
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G073054_T02 (Zea mays), 5'ss of exon 12
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtgaattttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag
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GAATGGTTTCGATGGCACCGATACACATTACTTCCATGGTGGTCCACGAGGCCATCATTGGATGTGGGATTCTCGCCTATTCAATTATGGGAGTTGGGAAgtatgtcatgt----gcagaatgtattagctaat--agttcatatttattttctatacacaca--------taacaattcattttgtgcag---------
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 12
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtgaattttaatcgaaaatgtagtgaacatacaacttccttaagcactat-cagttccaacagtctcttttgatcttttctaacag
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GAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAgtaagtgctggctccaaagaattcattggcata-gtatctgaaaaa-aatttctataccttctgttcaacagtaaatgacttactttaattcttaatttag
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 12
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtgaattttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag
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AAACAGGTTTGATGGAACTGATAGTCACTATTTCCATTCTGGATCAAGGGGTTACCACTGGATGTGGGATTCTCGCCTTTTTAATTACGGAAGCTGGGAAgtatgtgctttgatgccaaagttcaagaaatagtgttttgcccttta---tgctcttattgttttttgttgtagggattaattgtctctttgttttag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125167280|gb|EL192665.1|EL192665EST: GATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAA GTATTACGATATCTCCTTTCAAATGCACGGTGGTGGCT
genomic: GATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaact ... tttctaacagGTATTACGATATCTCCTTTCAAATGCACGGTGGTGGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtgaattttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT