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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTCAATATACACTGGATTAATCTACAACGAGTTCTTCTCTATACCATTCCCATTGTTTGCTCCTTCAGCGTATGATTGCCGGGATGTCTCTTGCAGgtattcaggctacttctaataattcaggtttttaaatgaaaaagcatattagtagaacaattgtaggaatatctttacggttctgatttttttttattttttttttccgttttcttctctttgttcag

Basic information

species Arabidopsis thaliana
transcript AT4G39080.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39080.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 12
TCTTCTCAATATACACTGGATTAATCTACAACGAGTTCTTCTCTATACCATTCCCATTGTTTGCTCCTTCAGCGTATGATTGCCGGGATGTCTCTTGCAGgtattcaggctacttctaataattcaggtttttaaatgaaaaagcatattagtagaacaattgtaggaatatctttacggttctgatttttttttattttttttttccgttttcttctctttgttcag
| |||||||| |||||||| || ||||| || |||||||| ||| | |||||| || | |||||||| || ||||||||||| || ||  | |||||||||||       ||   |   | |||       || | |         |||   |  || ||||     |  |||||| | ||| |   |||||| |||  ||| ||| | |                  
TATTCTCAATCTACACTGGCTTTATCTATAATGAGTTCTTTTCTGTCCCATTCGCAATCTTTGCTCCCTCTGCGTATGATTGTCGTGACCTTTCTTGCAGgta----aattaaaccccttgattggtaacatttattatcgtgctttatgcttttaaaaatttagtcaccatcttttctgtttt---ttttttgtatactttcttttcatgcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415768|gb|EG458360.1|EG458360
EST:     TTCCCATTGTTTGCTCCTTCAGCGTATGATTGCCGGGATGTCTCTTGCAG                         CGAAGCTACAACAATTGGTTTGATAAAGGTCAGAGACACTTATCCATTTGG
genomic: TTCCCATTGTTTGCTCCTTCAGCGTATGATTGCCGGGATGTCTCTTGCAGgtattcaggc ... ctttgttcagCGAAGCTACAACAATTGGTTTGATAAAGGTCAGAGACACTTATCCATTTGG