Sequence
atgc intronic sequence ATGC exonic sequenceGATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaagaacataactacgtgtgtgatgtgaattctcttatttttttcatcttcttaatttctctacttctttcttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G34910.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA20G37930.1 (Glycine max), 5'ss of exon 6
GATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaagaacataactacgtgtgtgatgtgaattctcttatttttttcatcttcttaatttctctacttctttcttcag-------------------
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GATGTTGCAAAGAGTGTAACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAgtgagt--gcctgctattgcatttggtatgagaattgtaactatgatctaagtttattccctttctaattcatttctgcaaaactgtgcttttattttag
upper sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G29360.1 (Glycine max), 5'ss of exon 12
GATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaagaacataactacgtgtgtga----tgtga--attctcttatttttttcatcttctta---atttctctacttct-ttcttcag------
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GATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAgtgagtgccggtattgcatttggtatgagaactgtaactatgatctaagttcattccctttctaattcatttgtgcacaactgtgcttttattttag
upper sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv00s0525g00010.t01 (Vitis vinifera), 5'ss of exon 5
GATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaagaacataactacgtgtgtgatgtgaat-tctcttatttttttcatcttcttaatttct-ctacttctttcttcag------------------
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GATGTTTCAAAGAGTGTGACAAAACTTGCTGTAAGAGAATCCCGAGCACAGGATCTGAGGAATGAAATTCTCAACTCTGAAAAgtgagtgtttttccg-ctatggctttcctccaactatccgtgacctatctagtatgcttagattgtacgaggtgtgcattttgcatttgacccttgttttt
upper sequence: AT4G34910.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv00s0441g00010.t01 (Vitis vinifera), 5'ss of exon 11
GATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaagaacataactacgtgtgtgatgtgaat-tctcttatttttttcatcttcttaatttct-ctacttctttcttcag------------------
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GATGTTTCAAAGAGTGTGACAAAACTTGCTGTAAGAGAATCCCGAGCACAGGATCTGAGGAATGAAATTGTCAACTCTGAAAAgtgagtatttttctg-ctatggctttcctccacctatccgtgacctatctagtatgcttagattgtacgaggtgtgcatttagcatttggcccttctttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86087864|gb|DR383623.1|DR383623EST: CGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAA GTTAAAAGCTCATTTTGAAGCTAATCCAAGAGACTTAGATCTGTTGAGACA
genomic: CGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaaga ... ctttcttcagGTTAAAAGCTCATTTTGAAGCTAATCCAAGAGACTTAGATCTGTTGAGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTCGAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAgtaagcaagaacataactacgtgtgtgatgtgaattctcttatttttttcatcttcttaatttctctacttctttcttcag
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