1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATCATAAAAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGgtttgttttactcatctaataagtgaaaatacacaagctctttttaaaacttctggcgagcacatgctaaactgcgttttccgattcag
species | Arabidopsis thaliana |
transcript | AT4G16660.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAG GTCTCAAAGGAAGCEST: gi|86078073|gb|DR373830.1|DR373830
genomic: AAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGgtttgtttta ... tccgattcagGTCTCAAAGGAAGC
EST: ACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAG GTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTEST: gi|124781814|gb|EH871757.1|EH871757
genomic: ACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGgtttgtttta ... tccgattcagGTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCT
EST: CTTCCAAAAGAAAAAATCGACGAG GTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTEST: gi|86029396|gb|DR325149.1|DR325149
genomic: CTTCCAAAAGAAAAAATCGACGAGgtttgtttta ... tccgattcagGTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCT
EST: AAGAATGGGAGANGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAG GTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCT
genomic: AAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGgtttgtttta ... tccgattcagGTCTCAAAGGAAGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATAAAAGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGgtttgttttactcatctaataagtgaaaatacacaagctctttttaaaacttctggcgagcacatgctaaactgcgttttccgattcag
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAA