Sequence
atgc intronic sequence ATGC exonic sequenceCATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAAgtaagcaaaaaataaaaagctgatgatgaccttgtcctttctttagagttgcttgactaacatgttataactggactgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G11710.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G08040.1 (Glycine max), 5'ss of exon 13
CATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAAgtaagcaaaaaataaaaagctgatgatgaccttgtcctttctttagagttgcttgactaacatgttataactggactgtag
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CATCATAAACCACCCTGAGATCATGAGTCCTTTAGCAAAGTGGCACAGATCAAAACGAGGCCTGACTGAACGTTTTGAATTGTTTGTTAATAAGCATGAAgtaagaccatgacatataggtgattattatttaaaataaaatggaatcatgctt--ctgac-cactgttacttttcag---
upper sequence: AT3G11710.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv14s0060g02350.t01 (Vitis vinifera), 5'ss of exon 29
CATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAAgtaagcaaaaaata--aaaagctg------atgatgaccttgtcctttctttagagttgcttgacta-----acatgttataactggactgtag--------
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CATCATCAACCATCCAGAAATAATGAGTCCTTTGGCAAAGTGGCACAGATCGAAACAAAGCTTGACTGAACGTTTTGAATTGTTTGTCAACAAGCATGAAgtacctacgccgtttcaagatttgttttctatttctattttttgttttttctaaaccaactctctcattcatacttgttacaactactctgtaattgcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86083865|gb|DR379624.1|DR379624EST: CGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAA CTCTGCAATGCCTACACGGAGCTAAACGATCCTGTGGTACAGCGCCAGCGT
genomic: CGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAAgtaagcaaaa ... tggactgtagCTCTGCAATGCCTACACGGAGCTAAACGATCCTGTGGTACAGCGCCAGCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCATCAACCAGCCCGAGATCATGAGTCCTTTGGCTAAATGGCACAGATCGAAGAGTGGATTGACAGAGAGATTCGAGCTGTTCATCAACAAACATGAAgtaagcaaaaaataaaaagctgatgatgaccttgtcctttctttagagttgcttgactaacatgttataactggactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT