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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttttatctctttctcag

Basic information

species Arabidopsis thaliana
transcript AT2G47510.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 11
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttt---tatctctttctcag--
 |||||  ||||||| |||||||||||| | ||||||||||||||||| || ||||| || ||||||||| || || | |     ||   | ||      | |   ||  |||| ||  |       ||   ||||   ||  ||  ||| |   
CGGCCCCCGATGTGGACTTGGTGAACTTATCCTACCTGAAAATGAGCCTGGGAGCAGCATTATGCCTgtaagactgta-ttgcatttgattgtttcagtttctcaattagcact-gtgctatcaagcattggttttaactacttccatcttacag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 11
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaat----gaatttttatctc--------tttctcag
||| ||  | |||||||||||||||||  | ||||| ||||||||||| || ||||| || ||||||||| | |  |  |  |  | |  |  | ||   |||   | || |  |            ||     |  || | | ||         || ||||
TGGTCCTCGGTGTGGTCTTGGTGAACTAATCCTACCAGAAAATGAGCCTGGGAGCAGCATTATGCCTgtaagcagactgttattatatcatgatatggtttttgtatgttgatcaacggaagacagcattgtgaagcttctgtttcaacttgtacttttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 11
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgta----------------tgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattca--aatgaatttttatctctttctcag---------------------------------
||| ||| | || ||||||||||||||  | || |||||||| || |||||||| |||||||||||||||                |||||  ||  ||  |   |    | ||  |||||||||| ||| | | |  ||||    |  |||||| |  |  |   |                                  
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 11
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatga-----atgc------aatcttcctttgctcttctgtcct----tttctttttcactagttttgattcaaatgaatttttatctctttctcag------------------------------------
||| ||| | || ||||||||||||||  | || |||||||| || ||||| |||||||||||||||||| ||     ||||      ||| |   |||| |   |   ||     |||  || ||||| | | |  ||||      | ||| |||     |  |                                    
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGGAGCAGTATCATGCCTgtaagatcctcatgctgactgaatataaatttgttacacaaaccagctgttttcttgtcacttgctatagttcattaatttatttgtcttgcaattggaatttgactctaagccacaactgtattctgtttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 12
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgcaatct---tcctttgctcttctgtcctttt----------ctttttcactagt-tttgattcaaat-gaatt--tttatctctttctcag---------------
||| ||| | ||||| |||||||||||  | || |||||||| |||||||| |||||||| |||||||||  |     ||||   |||  |    || | |     |            |||||||| |   ||| | ||  | | |||  |||||   |   | ||               
TGGTCCACGTTGTGGCCTTGGTGAACTCATTCTTCCTGAAAACGAGCCAGGCAGCAGTATTATGCCTgtaaaatcctgatctctttcccatatatttttatgacagtaaaaagatgatattttcacttgcacttgctacatttaggattcatttattcatcctttagctttttctatttcag

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 5'ss of exon 9
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgcaatcttc--ctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttttatctctttctcag---------------------------------
 |||||| | ||||| ||||||||||||  ||| ||||| ||||| ||||| |||||||||||||||||  |      | ||    |  | || || ||| | |||||  ||  ||  |    |   ||     ||| ||| |  |  || |                                 
CGGCCCACGCTGTGGCCTTGGTGAACTTACACTTCCTGATAATGAACCAGGCAGCAGTATCATGCCTgtgagttctttacctaaaaccattcttttttgttcatttctaatttcctgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124991783|gb|EL064052.1|EL064052
EST:     TTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCT                         GGGAAGGTGAATCCTACACAGTGTGAGGCC
genomic: TTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgtatgaatgc ... tctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCC