1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTTCGCGAGGCTGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACGgtatgcaaatgttcgacttctggaattgtcatagcttacgttccaagcttgaaaacaaactgtataaactgttgcag
species | Arabidopsis thaliana |
transcript | AT1G51610.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACG GTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAGAAAGEST: gi|125235737|gb|EL249822.1|EL249822
genomic: TGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACGgtatgcaaat ... actgttgcagGTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAGAAAG
EST: TGATTCTGCAATGCTCAATATTATGTCAAACTACG GTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGAACCGGTTAGAGAAAEST: gi|163971081|gb|ES110215.1|ES110215
genomic: TGATTCTGCAATGCTCAATATTATGTCAAACTACGgtatgcaaat ... actgttgcagGTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGA-CCGGTTAGAGAAA
EST: TGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACG GTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAGEST: gi|86088026|gb|DR383785.1|DR383785
genomic: TGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACGgtatgcaaat ... actgttgcagGTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAG
EST: TGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACG GTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAGAAAG
genomic: TGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACGgtatgcaaat ... actgttgcagGTGAGGAAGTTGTCACGGCTTTAGGAAGCGAAGTAGACCGGTTAGAGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCGCGAGGCTGCAAAGAACGGAGATGATTCTGCAATGCTCAATATTATGTCAAACTACGgtatgcaaatgttcgacttctggaattgtcatagcttacgttccaagcttgaaaacaaactgtataaactgttgcag
- - - - - - GCAAAG
- - - - - - - AAAGAA
- - - - - - - AAGAAC
- - - - - - - - - - GGAGAT
- - - - - - - - - - - GAGATG