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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGgtaaaaccgagaaatggctaggtgacatgctaaaagctccatgcagtacattgattgcttgtctcctttcttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G47560.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: LOC_Os11g17600.1 (Oryza sativa), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGgtaaaac-cgagaaatg--gctaggtgacatgctaaaagctc-catgcagtacattgattgct----tgtctcctttcttgttgcag---------------------------------
|||||||| ||  |||||||||||||||||||| || ||||||||||||| |||||||| || ||| | ||     | ||||| | |  | ||   |   | |  |  | | | ||  |  |  ||  ||||||  | || |||    | | |    | |||   ||                                  
AGAGGGCAACTCCAGAGGCCTGACCATGCTGATATGAGGTACAAATGCAGGACATATGCCCGACTTCTACAGTTCATCAAGgttacatgcaagttgtcctgttgtgaaaaacgatactattttacaaacagtactgttatggctacaatatgtgaaattttgcaccatattctcatgctttatattataatttttttctag

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGgtaaaaccgagaaatggctaggtgacatgctaaaagctccatgcagtacattgat-----tgcttgtctcctttcttgttgcag-----------------------------------------------
 | || ||| |||| ||||| || |||||||||||| ||||||| ||||| |||||||| || ||| || | |||||||||||  ||    | |     ||       ||||   || ||  |   |  |||  ||     |   | | |   |   | |||                                                  
CGGGGACAGTTGAAAAGGCCAGATCATGCTGATTTGAGGTACAAGTGCAGGACATATGCACGCCTTCTGAAGCATTTAAAGgtttaattatggatgatttacaatttctgcttcgagttcagttttgcgcatatatatatatatatatatatatatatattgagttaatttctttgtttcctcccttaattatctttcctctaaacttgcag

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGgtaaaaccgagaaatggcta-ggtgacatgctaaaagctccatgcagtacattgattgcttgtctcctttcttgttgcag--------
 |||| ||| |||||||||| |||||||||||| | ||||| |||||||| || |||||||| ||| | ||||| |||||||| | |   |  |     |    ||||   | |||      |  ||   || | ||  ||| | || ||| || |||           
CGAGGACAGTTGAAGAGGCCAGACCATGCTGATCTTCGGTATAAATGCAGGACTTATGCTCGCCTTCTACAACACTTAAAGgtcatattaaatacgaatttcaatgactatccaaagtggtgacaca-cccacttat-acttctttcttttgtttttgtgcatttccag

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ12163 (Selaginella moellendorffii), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGgtaaaaccgagaaatggctaggtgacatgctaaaagctccatgcagtacattgattgcttgtctcctttcttgttgcag
|| || |||||||| ||||| ||||| || ||||| || | |||||| ||||||||||||||| |  |||| || ||||||||   ||| |    |  || |      |   | |    ||||    |||                              
AGGGGTCAGCTGAAAAGGCCCGACCACGCAGATTTACGATTCAAATGTAGAACATATGCTCGTTTGCTGCAGCACTTAAAGgtgctacc-atttctaccttgtctttgtctcacactagccatttgatactccag-------------------------

upper sequence: AT1G47560.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: EFJ29370 (Selaginella moellendorffii), 5'ss of exon 12
AGAGGGCAGCTGAAGAGGCCTGACCATGCTGATTTGCGGTACAAATGCAGAACATATGCTCGTCTTATGCAACATTTAAAGgtaaaaccgagaaatggctaggtgacatgctaaaagctccatgcagtacattgattgcttgtctcctttcttgttgcag
|| || |||||||| ||||| ||||| || ||||| || | |||||| ||||||||||||||| |  |||| || ||||||||   ||| |    |  || |      |   | |    ||||    ||| |                            
AGGGGTCAGCTGAAAAGGCCCGACCACGCAGATTTACGATTCAAATGTAGAACATATGCTCGTTTGCTGCAGCACTTAAAGgtgctacc-atttctacctcgtctttgtctcacactagccatttgatacttcag-------------------------