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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagttgacaaccccatgttgatatgtctctttatcattttgaaatgcccttagtgcactaattttaacccaactcttaagttcaccaacaaaactttccttcttcacgtag

Basic information

species Arabidopsis thaliana
transcript AT5G55070.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA14G02530.2 (Glycine max), 5'ss of exon 11
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagttgacaaccccatgttgatatgtctctttatcattttgaaatgcccttagtgcactaattttaacccaactcttaagttcaccaacaaaactttccttcttcacgtag
|||||||||||||| ||||| ||||| || || ||  || ||||||| || || ||||| |||||  |||||||||| ||||||||||||||||||| ||||   |||||    |  ||  |   ||     ||||  |||    ||    ||   ||   | |    |       | | || | ||| |  | |   ||              
GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCCAAAACACGTTTGCTATGCTGACAACCTTCAATGAAGTTGATATgtaagtttt-gttgattgtcaaattgtagcataagattttaatattgctcaaa---ctgtatgtttttacccca-tgtgtgtataaaatgcactattacattatt--------------

upper sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA02G46200.1 (Glycine max), 5'ss of exon 11
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagttgacaaccccatgttgatatgtctctttatcattttgaaatgcccttagtgcactaattttaacccaactcttaagttcaccaacaaaactttccttcttcacgtag
|||||||||||||| ||||| ||||| || || ||  || ||||||| || || ||||| |||||  ||||||| || ||||||||||||||||||| ||||   |||||        |||  |  |||  | |||   |||   | ||| |    || | |  ||||  ||| |    |  || || ||| ||  |  |  | ||| |     
GTTCCTATGACAAGGCTTCGGAAACGAGTTGCTACACGGCTGAAAGATTCCCAAAACACATTTGCTATGCTGACTACCTTCAATGAAGTTGATATgtaagtttt-gttgat-------tgtcaaattgtagcattagattttcatattgctcaagctgga-tgttttttccccga----tgtgtgcatcaa-aattcactattacttta-----

upper sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv10s0116g01480.t01 (Vitis vinifera), 5'ss of exon 12
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagttgacaaccccatgttgatatgtctct--ttatcattttgaaatgcccttagtgcactaattttaacccaactcttaagttcaccaacaaaactttccttcttcacgtag
||||||||||||||| |  | ||||| || |||||  | |||||||| ||||| |||||||||||  ||||||| || ||||||||||||||||||| ||||  |  | |||     |  ||  | ||  | |  | |  ||| |   ||    || || |||| | | || |    |  || | || | | |     |                 
GTTCCTATGACAAGATTAAGGAAACGTGTTGCAACACGTTTGAAAGATTCTCAAAACACTTTTGCAATGCTGACCACATTCAATGAAGTTGATATgtaagttgtatgttacagtttga-attattttgattatagtcagtattatctcat-ttttttgtccacttaatgtagct--gcctttcattttagccaagtgcc-----------------

upper sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv19s0090g00750.t01 (Vitis vinifera), 5'ss of exon 6
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttac--agttgacaaccccatgttgatatgtctctttatcattttgaaatgcccttagtgcactaattttaacccaactcttaagt-tcaccaacaaaactttccttcttcacgtag
||||| |||||||| ||||| |||||||| ||||     |||||||| ||||| |||||||||||  || ||| ||| ||||||||| |||||||||  ||||   | |  || |    ||  |  || |  ||  | ||| ||||       || ||   |  || || ||| | |||   || | |        |||||   |            
GTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATATgtatgttatttattcaaccaatttataatattaggagtccatgtcaatttg-------ctcag---ataaagttgaactccacttggaattgtttttggttaaactccac------------

upper sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S154_6V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagttgacaaccccatgttg----atatgtctctttatcattttgaaatgcccttag--tgcactaattttaacccaactcttaagttcaccaacaaaactttccttcttcacgtag
|| || |||||  |||| || ||  | ||||| ||  |||||||||| ||||||||||||||||| ||| |||| || ||||| ||  |||| |||| || |  |||    ||||| |  |||    || |||  | |||   | |  || |    | |   |    | ||||||   |   | ||| ||                              
GTACCAATGACCCGACTACGAAAGAGAGTGGCCACACGGTTGAAAGATTCTCAGAACACTTTTGCATTGTTGACCACCTTCAACGAGATTGACATgtaagattgagtgtctaacccgaatttgcgagatgtgtacccttacagtgtctaattatattaaaactatgatgattttatgtcgg-tgttaggtagcttt------------------------

upper sequence: AT5G55070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S2_220V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATgtgagttacagt--tgacaaccccatgttgatatgtctctttatcattttgaaat----gcccttagtgcactaattttaacccaactcttaagttcaccaac-----aaaactttccttcttcacgtag--------------
||||| ||||| ||  | || ||||| ||||| ||| | ||||| || ||||| |||||||||||| | || ||||||||||| ||  ||||||||| |||| |  |  ||| ||  |    |   ||  | |    || |   | | ||    ||||||  |    |  |  |    ||    |    ||  | ||      | |  |||      |||  |                
GTTCCAATGACTAGGTTACGAAAACGAGTGGCTACTCGATTGAAGGATTCTCAAAACACTTTTGCGCTCCTCACAACTTTCAACGAGCTTGATATgtaagtttctttcttgaaaattcttgctaagtagttgttcagatgaagcttagatccgagcccttgatttgttcttcctgttacagtattatctttttctaatgttttacatattttgaggctcagatgtttctgtgtttgcag