1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTGGTCGTGGGTTTCCCAGCTACACCTCTACTGCTGGCTAGGGCACGTATTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAGgtaaaatattgcattctacccacttgtgtttttttcttattacaaataagcgctattccacagaagtcccaaagcacaaaactgctaaaatagatctatatgcttcgatagagctcggtttcaatgcaagacaagttttgaatcaatgtgtgtggttttgtgttggacag
species | Arabidopsis thaliana |
transcript | AT5G23670.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAG GTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAGEST: gi|124885631|gb|EH964533.1|EH964533
genomic: CTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAGgtaaaatatt ... tgttggacagGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAG
EST: TCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAG GTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAGEST: gi|124775318|gb|EH865447.1|EH865447
genomic: TCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAGgtaaaatatt ... tgttggacagGTTATAAGCAAAGTAGGTGACCTTAGCGGAATCAAATATTTCCCGGCAGAG
EST: TTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAG GTTATAAGCAAAGTAGGTGAACCTTAGCGGAATCAAATATTTCCCGGCGGA
genomic: TTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAGgtaaaatatt ... tgttggacagGTTATAAGCAAAGTAGGTGA-CCTTAGCGGAATCAAATATTTCCCGGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGTCGTGGGTTTCCCAGCTACACCTCTACTGCTGGCTAGGGCACGTATTTGCATCTCCGCATCTCATTCAAGAGAAGATCTTATAAGAGCCCTCAAGgtaaaatattgcattctacccacttgtgtttttttcttattacaaataagcgctattccacagaagtcccaaagcacaaaactgctaaaatagatctatatgcttcgatagagctcggtttcaatgcaagacaagttttgaatcaatgtgtgtggttttgtgttggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA