Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGTCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttacgattaccaatttaaacactgagttatttctgccacttcaggttacttattttgttaatgtcttttttttcag

Basic information

species Arabidopsis thaliana
transcript AT4G13430.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163994992|gb|ES159422.1|ES159422
EST:     ACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         CCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
genomic: ACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcagCCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
EST: gi|125015302|gb|EL087571.1|EL087571
EST:     ATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         CCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
genomic: ATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcagCCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
EST: gi|124957216|gb|EL032074.1|EL032074
EST:     CGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         CCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
genomic: CGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcagCCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
EST: gi|125225906|gb|EL239991.1|EL239991
EST:     TCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         CCTCATTCTCCTGACAACCGAGCTCT
genomic: TCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcagCCTCATTCTCCTGACAACCGAGCTCT
EST: gi|124709608|gb|EH801010.1|EH801010
EST:     CGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         CCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
genomic: CGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcagCCTCATTCTCCTGACAACCGAGCTCTAGCTAGAGAATGCAAAGACGTGAAA
EST: gi|125299491|gb|EL313576.1|EL313576
EST:     TCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         A
genomic: TCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcag-
EST: gi|125299491|gb|EL313576.1|EL313576
EST:     TCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAG                         A
genomic: TCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttac ... tttttttcag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGTCGCAGATTATAGATTTGACGTGTCAAAGCTGGAGCCTGTGGTGGCTAAGgtgggtttacgattaccaatttaaacactgagttatttctgccacttcaggttacttattttgttaatgtcttttttttcag

- - -  GCAGAT
- - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - TGGTGG