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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTCTTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGgtacatgacctctacggaatgaaccaccaccatctgtaattctgtcttttcgttactctttcccttttcagtgaacatacacaagtaaagtcactggtcgattcacaccacttcttttcccag

Basic information

species Arabidopsis thaliana
transcript AT3G18480.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G09890.3 (Glycine max), 5'ss of exon 11
AGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTCTTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGgtacatgacctctacggaatgaaccaccaccatctgtaattctgtcttttcgttactctttcccttttcagtgaacat-acacaagtaaagtcac--tggtcgattcacaccacttcttttcccag
||||||||| |  ||||| | ||| |||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||||||  | || ||||| ||||||             ||||| | |       | |  || |  | | |   ||    ||  |||   | |   || |  ||      ||| |||   |||  ||   |  | |||           
AGACTGGGAAGTGGCTACAAGTGGGGAAGAGATGAGCAAGATGGAGTCTCTTCTTCTTGATAAGAACCGTAAAATGGAACATGAACTAACACAGTTGAAGgta------------agaatgtaac----ttgtttagaaatgggacatccagtccacctgccccccataaacaaagaagacttcgaaaaaatcagaatggaagaaataatcaacta----------

upper sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA09G31920.1 (Glycine max), 5'ss of exon 13
AGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTCTTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGgtacatgacctctacggaatgaaccaccaccatctgtaattctgtcttttcgttactctttcccttttcagtgaacatacacaagtaaagtcactggtcgattcacaccacttcttttcccag
||||||||| |  ||||| | ||| |||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||||||  | || ||||| ||||||         |  |    | |     ||   | ||  | ||| |    | | |             |  |||| | |    ||| ||   | |  || |                      
AGACTGGGAAGTGGCTACAAGTGGAGAAGAGATGAGCAAGATGGAGTCTCTTCTTCTTGATAAGAACCGTAAAATGGAACATGAACTAACACAGTTGAAGgtaagaatgtgatttgtttagcaatgggacatccagtcctcctgcccc--cataaacaaagaagaagactttgaaaagatcagagtgaaagaaataatcaac---------------------

upper sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 11
AGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTCTTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGgtacatgacctctacggaatgaaccaccaccatctgtaattctgtcttttcgttactctttcccttttcagtgaacatacacaagtaaagtcactggtcgattcacaccacttcttttcccag
||| ||||| | |||||| | |||||| |||||||| ||| ||||||| |||||||||||||| ||  | ||||||||||||||  |||| ||||||||||||  | |    |||    |                   ||||  ||   | || || ||||  | |||  || |  ||||  |  | |||   ||||  |||      || |  | |     
AGATTGGGAAGTTGCTACTAGTGGTGAGGAGATGAGTAAACTGGAGTCCCTTCTTCTTGATAAGAATCGGAAAATGGAACATGAACTCACACAGTTAAAGgtatgtcagtggtacttggt-------------------ttcttcctgagctttgctttttctatattctatgtagctaca--aacatagtgcatggttcattatttagaccttgtgtgga--