1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTTCCAGAGGTGACTAAAGAATCATTTACGGAAGATGGATACTTCAAGACGGGAGATGCTGGAAGAGTGGATGAGGATGGATATTACGTGATTCTAGGACgtaagcagaacctataagtacattcaaacacaatttaaaagtactttgtgttccttcatttaacatcttatcttatcttctctggtgtcgatcag
species | Arabidopsis thaliana |
transcript | AT3G16170.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGAGGATGGATATTACGTGATTCTAGGAC GTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGTTATCTGCCTTAGEST: gi|86083933|gb|DR379692.1|DR379692
genomic: TGAGGATGGATATTACGTGATTCTAGGACgtaagcagaa ... tgtcgatcagGTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGTTATCTGCCTTAG
EST: GGGAGATGCTGGAAGAGTGGATGAGGATGGATATTACGTGATTCTAGGAC GTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGTTATCTGCCTTAG
genomic: GGGAGATGCTGGAAGAGTGGATGAGGATGGATATTACGTGATTCTAGGACgtaagcagaa ... tgtcgatcagGTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGTTATCTGCCTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCAGAGGTGACTAAAGAATCATTTACGGAAGATGGATACTTCAAGACGGGAGATGCTGGAAGAGTGGATGAGGATGGATATTACGTGATTCTAGGACgtaagcagaacctataagtacattcaaacacaatttaaaagtactttgtgttccttcatttaacatcttatcttatcttctctggtgtcgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA